sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1d5c | GDP | GTPase (Rab6) |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1d5c | GDP | GTPase (Rab6) | / | 1.132 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 1.028 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.999 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.997 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.993 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.988 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.987 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.986 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.986 | |
| 4q02 | GDP | GTPase KRas | / | 0.983 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.980 | |
| 4l9s | GDP | GTPase HRas | / | 0.980 | |
| 4q03 | GDP | GTPase KRas | / | 0.977 | |
| 4g0n | GNP | GTPase HRas | / | 0.974 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.972 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.972 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.971 | |
| 3kud | GDP | GTPase HRas | / | 0.969 | |
| 4dso | GSP | GTPase KRas | / | 0.964 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.963 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.958 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.958 | |
| 3rs4 | GNP | GTPase HRas | / | 0.958 | |
| 3rs7 | GNP | GTPase HRas | / | 0.958 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.950 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.949 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.948 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.947 | |
| 3rs5 | GNP | GTPase HRas | / | 0.943 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.942 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.941 | |
| 3k8y | GNP | GTPase HRas | / | 0.940 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.940 | |
| 3ddc | GNP | GTPase HRas | / | 0.939 | |
| 3i3s | GNP | GTPase HRas | / | 0.939 | |
| 4l9w | GNP | GTPase HRas | / | 0.939 | |
| 3oiw | GNP | GTPase HRas | / | 0.938 | |
| 3ref | GDP | Rho family GTPase | / | 0.938 | |
| 3rsl | GNP | GTPase HRas | / | 0.938 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.935 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.935 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.935 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.935 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.933 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 0.933 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.931 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.931 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.931 | |
| 4dls | GNP | GTPase HRas | / | 0.931 | |
| 4lpk | GDP | GTPase KRas | / | 0.931 | |
| 4luc | GDP | GTPase KRas | / | 0.931 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 0.930 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.930 | |
| 3oiu | GNP | GTPase HRas | / | 0.929 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.928 | |
| 4dlt | GNP | GTPase HRas | / | 0.928 | |
| 4dlv | GNP | GTPase HRas | / | 0.928 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 0.928 | |
| 3v4f | GNP | GTPase HRas | / | 0.927 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.926 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.924 | |
| 3rs0 | GNP | GTPase HRas | / | 0.924 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.923 | |
| 4epx | GDP | GTPase KRas | / | 0.923 | |
| 2c5l | GTP | GTPase HRas | / | 0.922 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.922 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.920 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.917 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.917 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.916 | |
| 4nyj | GNP | GTPase HRas | / | 0.915 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.915 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 0.915 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.914 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.913 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.913 | |
| 2rgc | GNP | GTPase HRas | / | 0.912 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.912 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.912 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.911 | |
| 5b2z | GNP | GTPase HRas | / | 0.911 | |
| 4mit | GTP | Rho-related protein racC | / | 0.910 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.909 | |
| 2rge | GNP | GTPase HRas | / | 0.909 | |
| 3tgp | GNP | GTPase HRas | / | 0.909 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.909 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.909 | |
| 4ql3 | GDP | GTPase KRas | / | 0.908 | |
| 4wa7 | GDP | GTPase KRas | / | 0.908 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.907 | |
| 3lbh | GNP | GTPase HRas | / | 0.907 | |
| 4dlz | GNP | GTPase HRas | / | 0.907 | |
| 4dlx | GNP | GTPase HRas | / | 0.906 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.905 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.905 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.905 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.905 | |
| 4tq9 | GDP | GTPase KRas | / | 0.905 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.904 | |
| 4epw | GDP | GTPase KRas | / | 0.904 | |
| 3l8y | GNP | GTPase HRas | / | 0.903 | |
| 3oiv | GNP | GTPase HRas | / | 0.903 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.903 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.902 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.900 | |
| 2cl6 | CAG | GTPase HRas | / | 0.898 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.898 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.897 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.893 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.893 | |
| 4k81 | GTP | GTPase HRas | / | 0.892 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.891 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.891 | |
| 3lbi | GNP | GTPase HRas | / | 0.891 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.890 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.890 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.888 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.887 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.884 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.882 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.882 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.881 | |
| 3k9l | GNP | GTPase HRas | / | 0.881 | |
| 4lrw | GDP | GTPase KRas | / | 0.880 | |
| 2rgb | GNP | GTPase HRas | / | 0.879 | |
| 4dlw | GNP | GTPase HRas | / | 0.877 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.876 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.875 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.875 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.875 | |
| 4nyi | GNP | GTPase HRas | / | 0.875 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.874 | |
| 4dsn | GCP | GTPase KRas | / | 0.872 | |
| 4dvg | GSP | Rho family GTPase | / | 0.872 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.871 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.871 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.870 | |
| 3lbn | GNP | GTPase HRas | / | 0.869 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.869 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.868 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.868 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.865 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.865 | |
| 2rgg | GNP | GTPase HRas | / | 0.864 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.863 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.862 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.862 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.860 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.859 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.859 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.858 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.854 | |
| 4l8g | GDP | GTPase KRas | / | 0.854 | |
| 2ce2 | GDP | GTPase HRas | / | 0.853 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.853 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.852 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.852 | |
| 4xvq | GNP | GTPase HRas | / | 0.852 | |
| 2fna | ADP | Uncharacterized protein | / | 0.851 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.849 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.847 | |
| 3r9x | GNP | GTPase Era | / | 0.847 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.845 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.844 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.843 | |
| 4dsu | GDP | GTPase KRas | / | 0.843 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.843 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.839 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.839 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.839 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.838 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.838 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.838 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.837 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.836 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.836 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.834 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.833 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.832 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.831 | |
| 4lv6 | GDP | GTPase KRas | / | 0.831 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.829 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.829 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.826 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.826 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.824 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.823 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.822 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.822 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.822 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.820 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.819 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.818 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.818 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.818 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.816 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.813 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.812 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.811 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.808 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.808 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.807 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.807 | |
| 1xmv | ADP | Protein RecA | / | 0.807 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.807 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.807 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.805 | |
| 1lfd | GNP | GTPase HRas | / | 0.805 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.805 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.805 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.805 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.804 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.802 | |
| 2zts | ADP | Uncharacterized protein | / | 0.802 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.801 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.801 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.801 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.800 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.800 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.800 | |
| 4v02 | ATP | Site-determining protein | / | 0.800 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.799 | |
| 1e4v | AP5 | Adenylate kinase | / | 0.798 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.798 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.798 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.798 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.797 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.797 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.797 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.797 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.794 | |
| 5cyo | GDP | Septin-9 | / | 0.794 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.792 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.790 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.790 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.790 | |
| 4xvr | GNP | GTPase HRas | / | 0.790 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.787 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.787 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.787 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.787 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.786 | |
| 3ieu | GDP | GTPase Era | / | 0.785 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.784 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.782 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.781 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.780 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.780 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.780 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.779 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.779 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.779 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.779 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.779 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.778 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.778 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.778 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.778 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.777 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.777 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.776 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.776 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.776 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.775 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.774 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.774 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.774 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.774 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.774 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.774 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.773 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.772 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.772 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.771 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.771 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.768 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.768 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.768 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.768 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.768 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.766 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.765 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.764 | |
| 2eck | ADP | Adenylate kinase | / | 0.763 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.763 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.762 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.762 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.762 | |
| 4xvu | ATP | ATPase GET3 | / | 0.760 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.759 | |
| 5bn3 | ADP | NEQ263 | / | 0.759 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.758 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.758 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.758 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.757 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.756 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.756 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.756 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.756 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.756 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.756 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.756 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.755 | |
| 4yqf | GDP | Septin-9 | / | 0.755 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.754 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.753 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.751 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.750 | |
| 1e4y | AP5 | Adenylate kinase | / | 0.750 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.750 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.749 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.749 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.748 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.748 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.748 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.748 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.747 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.746 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.746 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.744 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.744 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.743 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.743 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.742 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.742 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.742 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.742 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.741 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.740 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.740 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.740 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.739 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.739 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.739 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.738 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.738 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.738 | |
| 4db1 | ANP | Myosin-7 | / | 0.738 | |
| 4ma4 | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.738 | |
| 1ank | ANP | Adenylate kinase | / | 0.737 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.737 | |
| 3l1c | ADP | Protein claret segregational | / | 0.735 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.734 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.734 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.733 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.733 | |
| 4ike | ADP | Adenylate kinase | / | 0.732 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.732 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.731 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.731 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.731 | |
| 4jld | ADP | Adenylate kinase | / | 0.731 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.730 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.730 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.729 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.729 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.729 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.729 | |
| 4jky | ADP | Adenylate kinase | / | 0.729 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.728 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.728 | |
| 1g6o | ADP | Cag alpha | / | 0.728 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.728 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.726 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.725 | |
| 2zrj | AGS | Protein RecA | / | 0.725 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.725 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.724 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.724 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.724 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.723 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.723 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.721 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.721 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.720 | |
| 3ftq | GNP | Septin-2 | / | 0.719 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.719 | |
| 4c2u | ANP | DNA helicase | / | 0.718 | |
| 4fid | GDP | G protein alpha subunit, putative | / | 0.718 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.717 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.717 | |
| 4ldj | GDP | GTPase KRas | / | 0.716 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.715 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.715 | |
| 4o3m | ADP | Bloom syndrome protein | 3.6.4.12 | 0.715 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.714 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.713 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.713 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.712 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.711 | |
| 1j7k | ATP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.710 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.710 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.710 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.709 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.709 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.709 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.708 | |
| 4x8o | AP5 | Adenylate kinase | / | 0.708 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.707 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.707 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.707 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.707 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.706 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.706 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.706 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.706 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.705 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.705 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.705 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.702 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.702 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.702 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.701 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.701 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.701 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.701 | |
| 4cdg | ADP | Bloom syndrome protein | 3.6.4.12 | 0.698 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.696 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.695 | |
| 3kjg | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.695 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.694 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.693 | |
| 5ftc | ADP | TPR domain protein | / | 0.691 | |
| 4jlo | ADP | Adenylate kinase | / | 0.690 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.689 | |
| 1xms | ANP | Protein RecA | / | 0.688 | |
| 4iei | ADP | Gene 2 protein | / | 0.688 | |
| 4obe | GDP | GTPase KRas | / | 0.687 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.687 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.687 | |
| 5bn4 | ANP | V-type ATP synthase alpha chain | / | 0.687 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.686 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.686 | |
| 2zro | ADP | Protein RecA | / | 0.686 | |
| 3thy | ADP | DNA mismatch repair protein Msh2 | / | 0.686 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.686 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.685 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.684 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.684 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.683 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.683 | |
| 3dm5 | GDP | Signal recognition particle 54 kDa protein | / | 0.682 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.681 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.681 | |
| 2whx | ADP | Genome polyprotein | 3.4.21.91 | 0.681 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.681 | |
| 1nly | AGS | Cag alpha | / | 0.680 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.680 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.680 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.680 | |
| 3r7w | GNP | GTP-binding protein GTR2 | / | 0.680 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.679 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.677 | |
| 1e32 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.676 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.676 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.676 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.676 | |
| 2c98 | ADP | Psp operon transcriptional activator | / | 0.674 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.673 | |
| 3kb1 | ADP | Iron-sulfur cluster carrier protein | / | 0.673 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.672 | |
| 1sxj | ADP | Replication factor C subunit 5 | / | 0.672 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.672 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.671 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.670 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.670 | |
| 4qbh | AP5 | Adenylate kinase | / | 0.670 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.669 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.669 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.669 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.668 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.667 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.666 | |
| 2i1v | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.665 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.665 | |
| 4e03 | ADP | Plasmid partitioning protein ParF | / | 0.664 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.664 | |
| 2ad5 | ADP | CTP synthase | / | 0.663 | |
| 3aez | GDP | Pantothenate kinase | 2.7.1.33 | 0.663 | |
| 3bxz | ADP | Protein translocase subunit SecA | / | 0.663 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.663 | |
| 3cf0 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.662 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.661 | |
| 5ftf | ADP | TPR domain protein | / | 0.661 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.660 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.660 | |
| 1xp8 | AGS | Protein RecA | / | 0.659 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.658 | |
| 2a5y | ATP | Cell death protein 4 | / | 0.657 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.657 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.656 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.656 | |
| 1l2o | ADP | Myosin heavy chain, striated muscle | / | 0.655 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.653 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.653 | |
| 2osb | AP5 | Adenylate kinase | / | 0.653 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.653 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.652 | |
| 4d9e | LCS | D-cysteine desulfhydrase | / | 0.651 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.651 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.650 | |
| 1xkv | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.650 |