1.800 Å
X-ray
2011-08-20
| Name: | Uncharacterized ABC transporter ATP-binding protein MJ0796 |
|---|---|
| ID: | Y796_METJA |
| AC: | Q58206 |
| Organism: | Methanocaldococcus jannaschii |
| Reign: | Archaea |
| TaxID: | 243232 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 69 % |
| B | 31 % |
| B-Factor: | 42.191 |
|---|---|
| Number of residues: | 37 |
| Including | |
| Standard Amino Acids: | 35 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | NA |
| Ligandability | Volume (Å3) |
|---|---|
| 0.602 | 918.000 |
| % Hydrophobic | % Polar |
|---|---|
| 31.62 | 68.38 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 67.42 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 35.2776 | 2.12526 | -15.4897 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| DuAr | DuAr | TYR- 11 | 3.51 | 0 | Aromatic Face/Face |
| C4' | CB | ALA- 20 | 4.2 | 0 | Hydrophobic |
| O3B | N | GLY- 41 | 2.74 | 158.92 | H-Bond (Protein Donor) |
| O2B | N | GLY- 43 | 2.9 | 138.46 | H-Bond (Protein Donor) |
| O3A | N | GLY- 43 | 3.25 | 141.27 | H-Bond (Protein Donor) |
| O2B | N | LYS- 44 | 2.82 | 163 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 44 | 2.82 | 163.12 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 44 | 2.82 | 0 | Ionic (Protein Cationic) |
| O3B | NZ | LYS- 44 | 3.6 | 0 | Ionic (Protein Cationic) |
| O1B | N | SER- 45 | 2.8 | 164.58 | H-Bond (Protein Donor) |
| O1A | N | THR- 46 | 3.21 | 144.39 | H-Bond (Protein Donor) |
| O3' | NE2 | GLN- 1150 | 3.09 | 152.49 | H-Bond (Protein Donor) |
| O2' | OE1 | GLN- 1150 | 2.8 | 165.2 | H-Bond (Ligand Donor) |