sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.918 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.780 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.765 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.761 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.757 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.755 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.754 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.754 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.753 | |
| 3l1c | ADP | Protein claret segregational | / | 0.753 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.752 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.752 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.752 | |
| 1xmv | ADP | Protein RecA | / | 0.751 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.750 | |
| 2fna | ADP | Uncharacterized protein | / | 0.750 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.750 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.750 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.749 | |
| 4ldj | GDP | GTPase KRas | / | 0.749 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.748 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.748 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.747 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.747 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.746 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.746 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.746 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.746 | |
| 5bn3 | ADP | NEQ263 | / | 0.746 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.745 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.745 | |
| 2zts | ADP | Uncharacterized protein | / | 0.745 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.744 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.744 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.744 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.744 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.744 | |
| 4l8g | GDP | GTPase KRas | / | 0.744 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.743 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.743 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.743 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.742 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.742 | |
| 4obe | GDP | GTPase KRas | / | 0.742 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.742 | |
| 4luc | GDP | GTPase KRas | / | 0.741 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.740 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.740 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.740 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.740 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.738 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.738 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.738 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.738 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.738 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.738 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.738 | |
| 4q03 | GDP | GTPase KRas | / | 0.738 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.737 | |
| 3kud | GDP | GTPase HRas | / | 0.737 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.737 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.737 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.737 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.737 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.737 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.736 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.736 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.735 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.735 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.734 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.734 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.733 | |
| 5ftc | ADP | TPR domain protein | / | 0.733 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.732 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.732 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.732 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.731 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.731 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.731 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.731 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.731 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.730 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.729 | |
| 2i1v | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.729 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.728 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.728 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.728 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.727 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.727 | |
| 5cyo | GDP | Septin-9 | / | 0.727 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.726 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.726 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.726 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.725 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.724 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.723 | |
| 2eck | ADP | Adenylate kinase | / | 0.722 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.722 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.721 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.721 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.720 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.720 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.720 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.720 | |
| 4qbi | AP5 | Adenylate kinase | / | 0.720 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.720 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.719 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.719 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.719 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.719 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.718 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.718 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.718 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.717 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.717 | |
| 3ieu | GDP | GTPase Era | / | 0.716 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.716 | |
| 4jlo | ADP | Adenylate kinase | / | 0.716 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.716 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.715 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.715 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.715 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.715 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.715 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.715 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.714 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.714 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.714 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.714 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.714 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.713 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.713 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.712 | |
| 2zrj | AGS | Protein RecA | / | 0.712 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.712 | |
| 4dso | GSP | GTPase KRas | / | 0.712 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.711 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.711 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.711 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.711 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.711 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.711 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.711 | |
| 4mkf | AP5 | Adenylate kinase | / | 0.711 | |
| 4tyq | AP5 | Adenylate kinase | / | 0.711 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.710 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.710 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.710 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.710 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.709 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.709 | |
| 1q12 | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.708 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.708 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.708 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.706 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.706 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.706 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.706 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.706 | |
| 1g6o | ADP | Cag alpha | / | 0.705 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.705 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.705 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.704 | |
| 4x8o | AP5 | Adenylate kinase | / | 0.703 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.702 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.702 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.702 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.702 | |
| 1um8 | ADP | ATP-dependent Clp protease ATP-binding subunit ClpX | / | 0.701 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.700 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.700 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.699 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.699 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.699 | |
| 4jky | ADP | Adenylate kinase | / | 0.699 | |
| 4tq9 | GDP | GTPase KRas | / | 0.699 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.698 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.698 | |
| 2vcz | VC3 | Hematopoietic prostaglandin D synthase | / | 0.698 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.698 | |
| 3cf0 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.698 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.698 | |
| 4epx | GDP | GTPase KRas | / | 0.698 | |
| 4lv6 | GDP | GTPase KRas | / | 0.698 | |
| 4q02 | GDP | GTPase KRas | / | 0.698 | |
| 4ma4 | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.697 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.696 | |
| 3qi2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.696 | |
| 4jld | ADP | Adenylate kinase | / | 0.696 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.695 | |
| 4ike | ADP | Adenylate kinase | / | 0.695 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.695 | |
| 2zro | ADP | Protein RecA | / | 0.694 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.693 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.693 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.692 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.692 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.692 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.691 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.691 | |
| 4xvq | GNP | GTPase HRas | / | 0.691 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.689 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.689 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.689 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.689 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.689 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.689 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.688 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.687 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.687 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.687 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.687 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.687 | |
| 5ftf | ADP | TPR domain protein | / | 0.687 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.686 | |
| 1sxj | ADP | Replication factor C subunit 5 | / | 0.686 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.686 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.686 | |
| 1e32 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.684 | |
| 1e4v | AP5 | Adenylate kinase | / | 0.684 | |
| 1n6m | ADP | Protein claret segregational | / | 0.684 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 3ref | GDP | Rho family GTPase | / | 0.684 | |
| 4zca | ADP | Kinesin-like protein KIF11 | / | 0.684 | |
| 1nly | AGS | Cag alpha | / | 0.682 | |
| 2q2z | ADP | Kinesin-like protein KIF11 | / | 0.682 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.682 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.681 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.681 | |
| 2rgb | GNP | GTPase HRas | / | 0.681 | |
| 2rge | GNP | GTPase HRas | / | 0.681 | |
| 3ddc | GNP | GTPase HRas | / | 0.681 | |
| 2ce2 | GDP | GTPase HRas | / | 0.680 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.680 | |
| 3i3s | GNP | GTPase HRas | / | 0.680 | |
| 3oiu | GNP | GTPase HRas | / | 0.680 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.680 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.679 | |
| 2rgc | GNP | GTPase HRas | / | 0.679 | |
| 3oiw | GNP | GTPase HRas | / | 0.679 | |
| 3rs0 | GNP | GTPase HRas | / | 0.679 | |
| 3rsl | GNP | GTPase HRas | / | 0.679 | |
| 1lfd | GNP | GTPase HRas | / | 0.678 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.678 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.678 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.678 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.678 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.678 | |
| 4dlz | GNP | GTPase HRas | / | 0.678 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.677 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.677 | |
| 3uk6 | ADP | RuvB-like 2 | 3.6.4.12 | 0.677 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.677 | |
| 4mfe | BTN | Pyruvate carboxylase | / | 0.677 | |
| 4rz3 | ADP | Site-determining protein | / | 0.677 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.676 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.676 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.676 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.676 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.676 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.676 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.676 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.676 | |
| 1xp8 | AGS | Protein RecA | / | 0.675 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.675 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.675 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.675 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.674 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.674 | |
| 2cea | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.673 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.672 | |
| 4yqf | GDP | Septin-9 | / | 0.672 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.671 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.671 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.671 | |
| 1e4y | AP5 | Adenylate kinase | / | 0.670 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.670 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.670 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.669 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.669 | |
| 3thy | ADP | DNA mismatch repair protein Msh2 | / | 0.669 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.669 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.669 | |
| 4l9s | GDP | GTPase HRas | / | 0.668 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.667 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.667 | |
| 2zsa | ADP | Pantothenate kinase | 2.7.1.33 | 0.667 | |
| 4ql3 | GDP | GTPase KRas | / | 0.667 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.666 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.666 | |
| 4epw | GDP | GTPase KRas | / | 0.666 | |
| 2zw9 | SAM | tRNA wybutosine-synthesizing protein 4 | 2.1.1.290 | 0.665 | |
| 3ftq | GNP | Septin-2 | / | 0.665 | |
| 2q2y | ADP | Kinesin-like protein KIF11 | / | 0.664 | |
| 3nbx | ADP | ATPase RavA | 3.6.3 | 0.664 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.664 | |
| 4wa7 | GDP | GTPase KRas | / | 0.664 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.663 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.663 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.663 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.663 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.662 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.662 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.662 | |
| 4v02 | ATP | Site-determining protein | / | 0.662 | |
| 4xvr | GNP | GTPase HRas | / | 0.662 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.661 | |
| 2uz3 | TTP | Thymidine kinase | / | 0.661 | |
| 4dsu | GDP | GTPase KRas | / | 0.661 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.660 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.659 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.659 | |
| 2whq | HI6 | Acetylcholinesterase | 3.1.1.7 | 0.659 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.658 | |
| 3bxz | ADP | Protein translocase subunit SecA | / | 0.658 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.658 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.658 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.657 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.656 | |
| 3r9x | GNP | GTPase Era | / | 0.656 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.655 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.655 | |
| 3l8y | GNP | GTPase HRas | / | 0.655 | |
| 3oiv | GNP | GTPase HRas | / | 0.655 | |
| 4lrw | GDP | GTPase KRas | / | 0.655 | |
| 1xms | ANP | Protein RecA | / | 0.654 | |
| 3lbh | GNP | GTPase HRas | / | 0.654 | |
| 4dlt | GNP | GTPase HRas | / | 0.654 | |
| 4dlv | GNP | GTPase HRas | / | 0.654 | |
| 4dlx | GNP | GTPase HRas | / | 0.654 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.654 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.653 | |
| 4mkh | AP5 | Adenylate kinase | / | 0.653 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.652 | |
| 3lbi | GNP | GTPase HRas | / | 0.652 | |
| 4loc | BTN | Pyruvate carboxylase | / | 0.652 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.652 | |
| 4yaw | 2AM | NADPH--cytochrome P450 reductase | / | 0.652 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.652 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.651 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.651 | |
| 4yaf | 2AM | NADPH--cytochrome P450 reductase | / | 0.651 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.650 | |
| 2d4h | 5GP | Guanylate-binding protein 1 | / | 0.650 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.650 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.650 |