2.600 Å
X-ray
2016-02-16
| Name: | Phosphoenolpyruvate carboxykinase [GTP] |
|---|---|
| ID: | PCKG_MYCTA |
| AC: | A5TYT6 |
| Organism: | Mycobacterium tuberculosis |
| Reign: | Bacteria |
| TaxID: | 419947 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 40.665 |
|---|---|
| Number of residues: | 26 |
| Including | |
| Standard Amino Acids: | 23 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | MN MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.271 | 924.750 |
| % Hydrophobic | % Polar |
|---|---|
| 35.77 | 64.23 |
| According to VolSite | |

| HET Code: | GDP |
|---|---|
| Formula: | C10H12N5O11P2 |
| Molecular weight: | 440.177 g/mol |
| DrugBank ID: | DB04315 |
| Buried Surface Area: | 59.07 % |
| Polar Surface area: | 276.39 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 39.3929 | 11.1799 | 35.4852 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2B | N | ALA- 272 | 2.81 | 171.13 | H-Bond (Protein Donor) |
| O3B | N | GLY- 274 | 3.35 | 143.19 | H-Bond (Protein Donor) |
| O3A | N | GLY- 274 | 3.01 | 124.95 | H-Bond (Protein Donor) |
| O3B | NZ | LYS- 275 | 3.08 | 158.12 | H-Bond (Protein Donor) |
| O3B | N | LYS- 275 | 2.9 | 154.79 | H-Bond (Protein Donor) |
| O3B | NZ | LYS- 275 | 3.08 | 0 | Ionic (Protein Cationic) |
| O1B | N | THR- 276 | 2.97 | 162.68 | H-Bond (Protein Donor) |
| O2A | N | ASN- 277 | 2.98 | 157.52 | H-Bond (Protein Donor) |
| O2A | ND2 | ASN- 277 | 3.03 | 160.09 | H-Bond (Protein Donor) |
| C1' | CE2 | PHE- 501 | 4.49 | 0 | Hydrophobic |
| O6 | N | PHE- 514 | 3.03 | 169.78 | H-Bond (Protein Donor) |
| C1' | CZ | PHE- 514 | 4.18 | 0 | Hydrophobic |
| O6 | ND2 | ASN- 517 | 2.92 | 138.79 | H-Bond (Protein Donor) |
| O1B | MN | MN- 706 | 2.12 | 0 | Metal Acceptor |