2.200 Å
X-ray
2009-06-12
| Name: | Transitional endoplasmic reticulum ATPase |
|---|---|
| ID: | TERA_HUMAN |
| AC: | P55072 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 3.6.4.6 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 89 % |
| B | 11 % |
| B-Factor: | 35.871 |
|---|---|
| Number of residues: | 37 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.366 | 2217.375 |
| % Hydrophobic | % Polar |
|---|---|
| 40.49 | 59.51 |
| According to VolSite | |

| HET Code: | AGS |
|---|---|
| Formula: | C10H14N5O12P3S |
| Molecular weight: | 521.231 g/mol |
| DrugBank ID: | DB02930 |
| Buried Surface Area: | 66.42 % |
| Polar Surface area: | 329.24 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 21.4449 | 47.192 | -11.3318 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N6 | O | GLY- 207 | 2.84 | 144.55 | H-Bond (Ligand Donor) |
| N1 | N | GLY- 207 | 2.87 | 171.35 | H-Bond (Protein Donor) |
| O3B | N | GLY- 248 | 2.99 | 155.41 | H-Bond (Protein Donor) |
| O1B | N | GLY- 250 | 2.81 | 144.94 | H-Bond (Protein Donor) |
| O3G | NZ | LYS- 251 | 2.93 | 130.25 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 251 | 2.97 | 155.51 | H-Bond (Protein Donor) |
| O1B | N | LYS- 251 | 2.99 | 160.25 | H-Bond (Protein Donor) |
| O3G | NZ | LYS- 251 | 2.93 | 0 | Ionic (Protein Cationic) |
| O1B | NZ | LYS- 251 | 2.97 | 0 | Ionic (Protein Cationic) |
| O2B | N | THR- 252 | 2.93 | 160.01 | H-Bond (Protein Donor) |
| O1A | N | LEU- 253 | 2.94 | 174.78 | H-Bond (Protein Donor) |
| C3' | CD1 | LEU- 253 | 4.48 | 0 | Hydrophobic |
| C2' | CD2 | LEU- 253 | 4.36 | 0 | Hydrophobic |
| O3G | ND2 | ASN- 348 | 3.08 | 144.6 | H-Bond (Protein Donor) |
| C5' | CD1 | PHE- 360 | 4 | 0 | Hydrophobic |
| C4' | CE1 | PHE- 360 | 3.8 | 0 | Hydrophobic |
| O2' | CE1 | HIS- 384 | 2.62 | 156.86 | Weak HBond LIG |
| O2' | NE2 | HIS- 384 | 2.9 | 160.74 | H-Bond (Ligand Donor) |
| C5' | CB | ALA- 409 | 4.13 | 0 | Hydrophobic |
| C1' | CB | ALA- 412 | 4.22 | 0 | Hydrophobic |
| O2G | MG | MG- 801 | 2.12 | 0 | Metal Acceptor |
| O2B | MG | MG- 801 | 2.02 | 0 | Metal Acceptor |
| O2G | O | HOH- 894 | 3.05 | 179.96 | H-Bond (Protein Donor) |