2.200 Å
X-ray
2009-06-12
Name: | Transitional endoplasmic reticulum ATPase |
---|---|
ID: | TERA_HUMAN |
AC: | P55072 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.6.4.6 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 89 % |
B | 11 % |
B-Factor: | 35.871 |
---|---|
Number of residues: | 37 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.366 | 2217.375 |
% Hydrophobic | % Polar |
---|---|
40.49 | 59.51 |
According to VolSite |
HET Code: | AGS |
---|---|
Formula: | C10H14N5O12P3S |
Molecular weight: | 521.231 g/mol |
DrugBank ID: | DB02930 |
Buried Surface Area: | 66.42 % |
Polar Surface area: | 329.24 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
21.4449 | 47.192 | -11.3318 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N6 | O | GLY- 207 | 2.84 | 144.55 | H-Bond (Ligand Donor) |
N1 | N | GLY- 207 | 2.87 | 171.35 | H-Bond (Protein Donor) |
O3B | N | GLY- 248 | 2.99 | 155.41 | H-Bond (Protein Donor) |
O1B | N | GLY- 250 | 2.81 | 144.94 | H-Bond (Protein Donor) |
O3G | NZ | LYS- 251 | 2.93 | 130.25 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 251 | 2.97 | 155.51 | H-Bond (Protein Donor) |
O1B | N | LYS- 251 | 2.99 | 160.25 | H-Bond (Protein Donor) |
O3G | NZ | LYS- 251 | 2.93 | 0 | Ionic (Protein Cationic) |
O1B | NZ | LYS- 251 | 2.97 | 0 | Ionic (Protein Cationic) |
O2B | N | THR- 252 | 2.93 | 160.01 | H-Bond (Protein Donor) |
O1A | N | LEU- 253 | 2.94 | 174.78 | H-Bond (Protein Donor) |
C3' | CD1 | LEU- 253 | 4.48 | 0 | Hydrophobic |
C2' | CD2 | LEU- 253 | 4.36 | 0 | Hydrophobic |
O3G | ND2 | ASN- 348 | 3.08 | 144.6 | H-Bond (Protein Donor) |
C5' | CD1 | PHE- 360 | 4 | 0 | Hydrophobic |
C4' | CE1 | PHE- 360 | 3.8 | 0 | Hydrophobic |
O2' | CE1 | HIS- 384 | 2.62 | 156.86 | Weak HBond LIG |
O2' | NE2 | HIS- 384 | 2.9 | 160.74 | H-Bond (Ligand Donor) |
C5' | CB | ALA- 409 | 4.13 | 0 | Hydrophobic |
C1' | CB | ALA- 412 | 4.22 | 0 | Hydrophobic |
O2G | MG | MG- 801 | 2.12 | 0 | Metal Acceptor |
O2B | MG | MG- 801 | 2.02 | 0 | Metal Acceptor |
O2G | O | HOH- 894 | 3.05 | 179.96 | H-Bond (Protein Donor) |