2.500 Å
X-ray
2013-03-08
Name: | Formate--tetrahydrofolate ligase |
---|---|
ID: | FTHS_MOOTA |
AC: | Q2RM91 |
Organism: | Moorella thermoacetica |
Reign: | Bacteria |
TaxID: | 264732 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 40.768 |
---|---|
Number of residues: | 37 |
Including | |
Standard Amino Acids: | 35 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
1.072 | 1144.125 |
% Hydrophobic | % Polar |
---|---|
45.72 | 54.28 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 67.86 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-20.1519 | 32.4013 | 50.6723 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2B | N | GLY- 73 | 3.32 | 141.52 | H-Bond (Protein Donor) |
O3A | N | GLY- 73 | 2.7 | 121.92 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 74 | 2.85 | 158.63 | H-Bond (Protein Donor) |
O2B | N | LYS- 74 | 3.1 | 166.18 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 74 | 2.85 | 0 | Ionic (Protein Cationic) |
O1B | N | THR- 75 | 3.03 | 166.19 | H-Bond (Protein Donor) |
O1A | OG1 | THR- 76 | 2.8 | 150.73 | H-Bond (Protein Donor) |
O1A | N | THR- 76 | 2.8 | 168.62 | H-Bond (Protein Donor) |
O3B | NZ | LYS- 108 | 2.75 | 0 | Ionic (Protein Cationic) |
O2A | NZ | LYS- 108 | 3.84 | 0 | Ionic (Protein Cationic) |
O2' | O | GLY- 113 | 2.73 | 165.46 | H-Bond (Ligand Donor) |
N7 | ND2 | ASN- 382 | 2.91 | 156.69 | H-Bond (Protein Donor) |
N6 | OD1 | ASN- 382 | 3.22 | 159.64 | H-Bond (Ligand Donor) |
N6 | O | ALA- 383 | 2.82 | 155.44 | H-Bond (Ligand Donor) |
DuAr | DuAr | PHE- 384 | 3.56 | 0 | Aromatic Face/Face |
O1B | MG | MG- 606 | 2.15 | 0 | Metal Acceptor |