2.100 Å
X-ray
2010-04-22
| Name: | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] |
|---|---|
| ID: | PCKGC_RAT |
| AC: | P07379 |
| Organism: | Rattus norvegicus |
| Reign: | Eukaryota |
| TaxID: | 10116 |
| EC Number: | 4.1.1.32 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 12.685 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | MN MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.494 | 604.125 |
| % Hydrophobic | % Polar |
|---|---|
| 44.13 | 55.87 |
| According to VolSite | |

| HET Code: | GDP |
|---|---|
| Formula: | C10H12N5O11P2 |
| Molecular weight: | 440.177 g/mol |
| DrugBank ID: | DB04315 |
| Buried Surface Area: | 62.23 % |
| Polar Surface area: | 276.39 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 12.0608 | 0.962 | 11.6785 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2B | N | ALA- 287 | 2.71 | 157.69 | H-Bond (Protein Donor) |
| C5' | CB | ALA- 287 | 4.49 | 0 | Hydrophobic |
| O3B | N | GLY- 289 | 3.14 | 131.12 | H-Bond (Protein Donor) |
| O3A | N | GLY- 289 | 2.78 | 127.29 | H-Bond (Protein Donor) |
| O3B | N | LYS- 290 | 2.91 | 158.3 | H-Bond (Protein Donor) |
| O1B | N | THR- 291 | 2.93 | 160.64 | H-Bond (Protein Donor) |
| O2A | N | ASN- 292 | 2.9 | 131.76 | H-Bond (Protein Donor) |
| O6 | N | PHE- 530 | 2.93 | 170.93 | H-Bond (Protein Donor) |
| C2' | CE1 | PHE- 530 | 4.21 | 0 | Hydrophobic |
| O6 | ND2 | ASN- 533 | 2.94 | 154.88 | H-Bond (Protein Donor) |
| O1B | MN | MN- 701 | 2.11 | 0 | Metal Acceptor |