2.500 Å
X-ray
2000-11-07
| Name: | Cag alpha |
|---|---|
| ID: | Q7BK04_HELPX |
| AC: | Q7BK04 |
| Organism: | Helicobacter pylori |
| Reign: | Bacteria |
| TaxID: | 210 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 3 % |
| B | 97 % |
| B-Factor: | 31.679 |
|---|---|
| Number of residues: | 33 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.406 | 2035.125 |
| % Hydrophobic | % Polar |
|---|---|
| 37.81 | 62.19 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 56.56 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -12.494 | 23.6211 | 21.5836 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2B | NH2 | ARG- 133 | 3.05 | 127.33 | H-Bond (Protein Donor) |
| O2B | N | GLY- 181 | 2.73 | 146.93 | H-Bond (Protein Donor) |
| O1B | N | GLY- 183 | 3.2 | 146.68 | H-Bond (Protein Donor) |
| O3A | N | GLY- 183 | 3.21 | 129.87 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 184 | 2.9 | 158.84 | H-Bond (Protein Donor) |
| O1B | N | LYS- 184 | 3.06 | 146.11 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 184 | 2.9 | 0 | Ionic (Protein Cationic) |
| O3B | OG1 | THR- 185 | 2.73 | 175.94 | H-Bond (Protein Donor) |
| O2A | OG1 | THR- 186 | 2.66 | 162.92 | H-Bond (Protein Donor) |
| O2A | N | THR- 186 | 2.75 | 154.09 | H-Bond (Protein Donor) |
| O3' | O | HOH- 1286 | 2.62 | 179.98 | H-Bond (Protein Donor) |