1.800 Å
X-ray
2014-08-19
Name: | Phosphoenolpyruvate carboxykinase [GTP] |
---|---|
ID: | PCKG_MYCTU |
AC: | P9WIH3 |
Organism: | Mycobacterium tuberculosis |
Reign: | Bacteria |
TaxID: | 83332 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 36.852 |
---|---|
Number of residues: | 25 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MN |
Ligandability | Volume (Å3) |
---|---|
0.245 | 911.250 |
% Hydrophobic | % Polar |
---|---|
35.56 | 64.44 |
According to VolSite |
HET Code: | GDP |
---|---|
Formula: | C10H12N5O11P2 |
Molecular weight: | 440.177 g/mol |
DrugBank ID: | DB04315 |
Buried Surface Area: | 59.6 % |
Polar Surface area: | 276.39 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-12.2657 | -11.3242 | -35.3412 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3B | N | ALA- 272 | 2.8 | 150.68 | H-Bond (Protein Donor) |
O2B | N | CYS- 273 | 3.48 | 137.76 | H-Bond (Protein Donor) |
O2B | N | GLY- 274 | 3.21 | 145.75 | H-Bond (Protein Donor) |
O3A | N | GLY- 274 | 2.9 | 128.03 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 275 | 2.73 | 148.79 | H-Bond (Protein Donor) |
O2B | N | LYS- 275 | 2.86 | 158.18 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 275 | 2.73 | 0 | Ionic (Protein Cationic) |
O1B | N | THR- 276 | 2.9 | 161.3 | H-Bond (Protein Donor) |
O1A | N | ASN- 277 | 2.97 | 161.69 | H-Bond (Protein Donor) |
O1A | ND2 | ASN- 277 | 2.86 | 155.04 | H-Bond (Protein Donor) |
C2' | CE1 | PHE- 515 | 4.19 | 0 | Hydrophobic |
C1' | CZ | PHE- 515 | 4.27 | 0 | Hydrophobic |
O6 | N | PHE- 515 | 2.93 | 172.56 | H-Bond (Protein Donor) |
O6 | ND2 | ASN- 518 | 2.9 | 143.14 | H-Bond (Protein Donor) |
O1B | MN | MN- 702 | 2.2 | 0 | Metal Acceptor |