2.960 Å
X-ray
2014-11-09
Name: | ATP-dependent zinc metalloprotease FtsH |
---|---|
ID: | FTSH_AQUAE |
AC: | O67077 |
Organism: | Aquifex aeolicus |
Reign: | Bacteria |
TaxID: | 224324 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 83 % |
C | 17 % |
B-Factor: | 99.999 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 36 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.798 | 1215.000 |
% Hydrophobic | % Polar |
---|---|
30.83 | 69.17 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 70.59 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
32.7999 | 29.7148 | 16.8449 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N6 | O | ALA- 158 | 2.96 | 146.16 | H-Bond (Ligand Donor) |
N1 | N | ALA- 158 | 2.84 | 168.28 | H-Bond (Protein Donor) |
O2B | N | GLY- 198 | 2.85 | 159.77 | H-Bond (Protein Donor) |
O3B | N | VAL- 199 | 3.24 | 120.89 | H-Bond (Protein Donor) |
O3A | N | GLY- 200 | 3.13 | 136.12 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 201 | 3.83 | 0 | Ionic (Protein Cationic) |
O2B | NZ | LYS- 201 | 3.52 | 0 | Ionic (Protein Cationic) |
O3B | NZ | LYS- 201 | 2.75 | 0 | Ionic (Protein Cationic) |
O3B | N | LYS- 201 | 2.96 | 163.38 | H-Bond (Protein Donor) |
O3B | NZ | LYS- 201 | 2.75 | 157.28 | H-Bond (Protein Donor) |
O1B | N | THR- 202 | 2.74 | 156.18 | H-Bond (Protein Donor) |
O2A | OG1 | THR- 202 | 2.8 | 162.01 | H-Bond (Protein Donor) |
O2A | N | LEU- 203 | 2.77 | 147.18 | H-Bond (Protein Donor) |
C2' | CD2 | LEU- 203 | 3.79 | 0 | Hydrophobic |
N3 | NE2 | HIS- 338 | 3.01 | 140.82 | H-Bond (Protein Donor) |
C5' | CB | ALA- 363 | 3.61 | 0 | Hydrophobic |
O3' | OE2 | GLU- 366 | 2.98 | 125.92 | H-Bond (Ligand Donor) |
O3' | OE1 | GLU- 366 | 2.9 | 157.38 | H-Bond (Ligand Donor) |