2.200 Å
X-ray
2011-01-19
Name: | Kinesin heavy chain |
---|---|
ID: | KINH_DROME |
AC: | P17210 |
Organism: | Drosophila melanogaster |
Reign: | Eukaryota |
TaxID: | 7227 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 16 % |
B | 84 % |
B-Factor: | 29.417 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
1.192 | 1120.500 |
% Hydrophobic | % Polar |
---|---|
42.47 | 57.53 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 55.97 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
24.3909 | 23.0321 | -43.2473 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | N | SER- 95 | 2.62 | 153.66 | H-Bond (Protein Donor) |
C5' | CB | SER- 95 | 4.5 | 0 | Hydrophobic |
O3B | N | GLY- 97 | 3.09 | 155.68 | H-Bond (Protein Donor) |
O3A | N | GLY- 97 | 3.28 | 128.63 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 98 | 3.97 | 0 | Ionic (Protein Cationic) |
O3B | NZ | LYS- 98 | 2.96 | 0 | Ionic (Protein Cationic) |
O3B | NZ | LYS- 98 | 2.96 | 175.85 | H-Bond (Protein Donor) |
O3B | N | LYS- 98 | 2.93 | 144.24 | H-Bond (Protein Donor) |
O2B | N | THR- 99 | 2.96 | 159.83 | H-Bond (Protein Donor) |
O2A | N | HIS- 100 | 2.59 | 161.48 | H-Bond (Protein Donor) |
C2' | CB | HIS- 100 | 4.25 | 0 | Hydrophobic |
O2B | MG | MG- 800 | 2.08 | 0 | Metal Acceptor |