2.200 Å
X-ray
2011-01-19
| Name: | Kinesin heavy chain |
|---|---|
| ID: | KINH_DROME |
| AC: | P17210 |
| Organism: | Drosophila melanogaster |
| Reign: | Eukaryota |
| TaxID: | 7227 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 16 % |
| B | 84 % |
| B-Factor: | 29.417 |
|---|---|
| Number of residues: | 33 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 1.192 | 1120.500 |
| % Hydrophobic | % Polar |
|---|---|
| 42.47 | 57.53 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 55.97 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 24.3909 | 23.0321 | -43.2473 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1B | N | SER- 95 | 2.62 | 153.66 | H-Bond (Protein Donor) |
| C5' | CB | SER- 95 | 4.5 | 0 | Hydrophobic |
| O3B | N | GLY- 97 | 3.09 | 155.68 | H-Bond (Protein Donor) |
| O3A | N | GLY- 97 | 3.28 | 128.63 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 98 | 3.97 | 0 | Ionic (Protein Cationic) |
| O3B | NZ | LYS- 98 | 2.96 | 0 | Ionic (Protein Cationic) |
| O3B | NZ | LYS- 98 | 2.96 | 175.85 | H-Bond (Protein Donor) |
| O3B | N | LYS- 98 | 2.93 | 144.24 | H-Bond (Protein Donor) |
| O2B | N | THR- 99 | 2.96 | 159.83 | H-Bond (Protein Donor) |
| O2A | N | HIS- 100 | 2.59 | 161.48 | H-Bond (Protein Donor) |
| C2' | CB | HIS- 100 | 4.25 | 0 | Hydrophobic |
| O2B | MG | MG- 800 | 2.08 | 0 | Metal Acceptor |