2.000 Å
X-ray
2012-12-19
Name: | Conserved Archaeal protein |
---|---|
ID: | Q4J9L0_SULAC |
AC: | Q4J9L0 |
Organism: | Sulfolobus acidocaldarius |
Reign: | Archaea |
TaxID: | 330779 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 92 % |
B | 8 % |
B-Factor: | 41.098 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.570 | 1410.750 |
% Hydrophobic | % Polar |
---|---|
30.86 | 69.14 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 50.15 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-6.88326 | 205.793 | 127.083 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N6 | OG1 | THR- 239 | 2.77 | 152.37 | H-Bond (Ligand Donor) |
O1B | N | ALA- 265 | 3.12 | 141.12 | H-Bond (Protein Donor) |
C5' | CB | ALA- 265 | 4.37 | 0 | Hydrophobic |
O2B | N | GLY- 267 | 3.04 | 141.55 | H-Bond (Protein Donor) |
O3A | N | GLY- 267 | 3.02 | 123.36 | H-Bond (Protein Donor) |
O2B | N | LYS- 268 | 2.96 | 152.73 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 268 | 2.71 | 156.71 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 268 | 2.71 | 0 | Ionic (Protein Cationic) |
O3B | N | THR- 269 | 2.87 | 159.87 | H-Bond (Protein Donor) |
O2A | N | THR- 270 | 2.81 | 146.56 | H-Bond (Protein Donor) |
O2A | OG1 | THR- 270 | 2.62 | 154.06 | H-Bond (Protein Donor) |
O3B | MG | MG- 602 | 2.02 | 0 | Metal Acceptor |