2.900 Å
X-ray
2004-01-14
Name: | Transitional endoplasmic reticulum ATPase |
---|---|
ID: | TERA_MOUSE |
AC: | Q01853 |
Organism: | Mus musculus |
Reign: | Eukaryota |
TaxID: | 10090 |
EC Number: | 3.6.4.6 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 91 % |
E | 9 % |
B-Factor: | 44.713 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.203 | 486.000 |
% Hydrophobic | % Polar |
---|---|
45.83 | 54.17 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 62.81 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
42.7063 | -33.3318 | 17.1839 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N6 | O | GLY- 207 | 3.06 | 142.8 | H-Bond (Ligand Donor) |
N1 | N | GLY- 207 | 3.03 | 159.77 | H-Bond (Protein Donor) |
O3B | N | GLY- 248 | 3.08 | 159.68 | H-Bond (Protein Donor) |
O2B | N | GLY- 250 | 2.78 | 138.24 | H-Bond (Protein Donor) |
O3A | N | GLY- 250 | 3.45 | 144.14 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 251 | 2.85 | 0 | Ionic (Protein Cationic) |
O2B | N | LYS- 251 | 3.19 | 173.02 | H-Bond (Protein Donor) |
O1B | OG1 | THR- 252 | 3 | 167.73 | H-Bond (Protein Donor) |
O1B | N | THR- 252 | 3.2 | 137.02 | H-Bond (Protein Donor) |
O1A | N | THR- 252 | 3.03 | 129.37 | H-Bond (Protein Donor) |
O1A | N | LEU- 253 | 2.99 | 149.59 | H-Bond (Protein Donor) |
C2' | CD1 | LEU- 253 | 4.01 | 0 | Hydrophobic |
O2' | NE2 | HIS- 384 | 3.02 | 166.52 | H-Bond (Ligand Donor) |
C5' | CB | ALA- 409 | 3.76 | 0 | Hydrophobic |
C1' | CB | ALA- 412 | 3.99 | 0 | Hydrophobic |