2.500 Å
X-ray
1999-01-15
Name: | Myosin heavy chain, striated muscle |
---|---|
ID: | MYS_ARGIR |
AC: | P24733 |
Organism: | Argopecten irradians |
Reign: | Eukaryota |
TaxID: | 31199 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 35.579 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.044 | 577.125 |
% Hydrophobic | % Polar |
---|---|
33.33 | 66.67 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 63.62 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
2.947 | -10.1497 | 0.00588889 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O4' | ND2 | ASN- 124 | 2.87 | 164.46 | H-Bond (Protein Donor) |
C1' | CD1 | TYR- 126 | 4.36 | 0 | Hydrophobic |
N6 | OH | TYR- 132 | 2.97 | 153.17 | H-Bond (Ligand Donor) |
O3B | N | GLY- 179 | 2.98 | 152.88 | H-Bond (Protein Donor) |
O2B | N | GLY- 181 | 3.02 | 165.58 | H-Bond (Protein Donor) |
O2B | N | LYS- 182 | 2.75 | 141.24 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 182 | 2.91 | 150.08 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 182 | 2.91 | 0 | Ionic (Protein Cationic) |
O3B | NZ | LYS- 182 | 3.84 | 0 | Ionic (Protein Cationic) |
O1B | N | THR- 183 | 2.9 | 159.32 | H-Bond (Protein Donor) |
O2A | N | GLU- 184 | 2.8 | 168.67 | H-Bond (Protein Donor) |
C3' | CG | GLU- 184 | 4.03 | 0 | Hydrophobic |
O3B | ND2 | ASN- 237 | 3.14 | 120.75 | H-Bond (Protein Donor) |
O1A | ND2 | ASN- 237 | 3 | 163.47 | H-Bond (Protein Donor) |
O1B | MG | MG- 836 | 2.12 | 0 | Metal Acceptor |