2.600 Å
X-ray
2012-05-03
Name: | ATP synthase subunit alpha, mitochondrial |
---|---|
ID: | ATPA_BOVIN |
AC: | P19483 |
Organism: | Bos taurus |
Reign: | Eukaryota |
TaxID: | 9913 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 89 % |
E | 11 % |
B-Factor: | 44.056 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.241 | 2524.500 |
% Hydrophobic | % Polar |
---|---|
36.10 | 63.90 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 51.54 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
1.76189 | -13.7332 | 42.5259 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | N | GLN- 172 | 2.98 | 146.9 | H-Bond (Protein Donor) |
C5' | CB | GLN- 172 | 4.09 | 0 | Hydrophobic |
O3B | N | THR- 173 | 3.22 | 135.61 | H-Bond (Protein Donor) |
O3B | N | GLY- 174 | 3.39 | 151.01 | H-Bond (Protein Donor) |
O3A | N | GLY- 174 | 2.91 | 130.74 | H-Bond (Protein Donor) |
O3B | NZ | LYS- 175 | 2.75 | 159.05 | H-Bond (Protein Donor) |
O3B | N | LYS- 175 | 3.21 | 160.42 | H-Bond (Protein Donor) |
O3B | NZ | LYS- 175 | 2.75 | 0 | Ionic (Protein Cationic) |
O2B | N | THR- 176 | 2.74 | 176.17 | H-Bond (Protein Donor) |
O2A | OG | SER- 177 | 2.69 | 166.61 | H-Bond (Protein Donor) |
O2A | N | SER- 177 | 2.89 | 144.79 | H-Bond (Protein Donor) |
C1' | CZ | PHE- 357 | 4.1 | 0 | Hydrophobic |
N6 | O | GLN- 430 | 3.1 | 173.98 | H-Bond (Ligand Donor) |
O2' | OE1 | GLN- 432 | 3.17 | 149.84 | H-Bond (Ligand Donor) |
O2B | MG | MG- 601 | 2.32 | 0 | Metal Acceptor |