3.000 Å
X-ray
2008-03-01
Name: | Transitional endoplasmic reticulum ATPase |
---|---|
ID: | TERA_MOUSE |
AC: | Q01853 |
Organism: | Mus musculus |
Reign: | Eukaryota |
TaxID: | 10090 |
EC Number: | 3.6.4.6 |
Chain Name: | Percentage of Residues within binding site |
---|---|
H | 6 % |
M | 94 % |
B-Factor: | 71.145 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.134 | 2662.875 |
% Hydrophobic | % Polar |
---|---|
37.14 | 62.86 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 61.86 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-19.2268 | -44.792 | -4.86596 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N6 | O | GLY- 480 | 3.34 | 152.68 | H-Bond (Ligand Donor) |
N1 | N | GLY- 480 | 2.84 | 160.06 | H-Bond (Protein Donor) |
O2B | N | GLY- 521 | 3.44 | 133.22 | H-Bond (Protein Donor) |
O3B | N | GLY- 521 | 2.91 | 156.7 | H-Bond (Protein Donor) |
O2B | N | CYS- 522 | 2.9 | 159.47 | H-Bond (Protein Donor) |
O2B | N | GLY- 523 | 2.85 | 125.66 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 524 | 3.98 | 0 | Ionic (Protein Cationic) |
O2B | NZ | LYS- 524 | 2.94 | 0 | Ionic (Protein Cationic) |
O3B | NZ | LYS- 524 | 3.54 | 0 | Ionic (Protein Cationic) |
O2B | N | LYS- 524 | 2.77 | 150.76 | H-Bond (Protein Donor) |
O1B | OG1 | THR- 525 | 3.28 | 153.28 | H-Bond (Protein Donor) |
O1B | N | THR- 525 | 2.98 | 144.28 | H-Bond (Protein Donor) |
O1A | N | THR- 525 | 2.85 | 125.16 | H-Bond (Protein Donor) |
O1A | N | LEU- 526 | 3.26 | 157.11 | H-Bond (Protein Donor) |
C3' | CD1 | LEU- 526 | 4.01 | 0 | Hydrophobic |
C4' | CB | ALA- 685 | 4.38 | 0 | Hydrophobic |
O2' | OG1 | THR- 688 | 3.12 | 156.62 | H-Bond (Ligand Donor) |
C1' | CB | THR- 688 | 4.03 | 0 | Hydrophobic |