3.000 Å
X-ray
2008-03-01
| Name: | Transitional endoplasmic reticulum ATPase |
|---|---|
| ID: | TERA_MOUSE |
| AC: | Q01853 |
| Organism: | Mus musculus |
| Reign: | Eukaryota |
| TaxID: | 10090 |
| EC Number: | 3.6.4.6 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| H | 6 % |
| M | 94 % |
| B-Factor: | 71.145 |
|---|---|
| Number of residues: | 33 |
| Including | |
| Standard Amino Acids: | 33 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.134 | 2662.875 |
| % Hydrophobic | % Polar |
|---|---|
| 37.14 | 62.86 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 61.86 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -19.2268 | -44.792 | -4.86596 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N6 | O | GLY- 480 | 3.34 | 152.68 | H-Bond (Ligand Donor) |
| N1 | N | GLY- 480 | 2.84 | 160.06 | H-Bond (Protein Donor) |
| O2B | N | GLY- 521 | 3.44 | 133.22 | H-Bond (Protein Donor) |
| O3B | N | GLY- 521 | 2.91 | 156.7 | H-Bond (Protein Donor) |
| O2B | N | CYS- 522 | 2.9 | 159.47 | H-Bond (Protein Donor) |
| O2B | N | GLY- 523 | 2.85 | 125.66 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 524 | 3.98 | 0 | Ionic (Protein Cationic) |
| O2B | NZ | LYS- 524 | 2.94 | 0 | Ionic (Protein Cationic) |
| O3B | NZ | LYS- 524 | 3.54 | 0 | Ionic (Protein Cationic) |
| O2B | N | LYS- 524 | 2.77 | 150.76 | H-Bond (Protein Donor) |
| O1B | OG1 | THR- 525 | 3.28 | 153.28 | H-Bond (Protein Donor) |
| O1B | N | THR- 525 | 2.98 | 144.28 | H-Bond (Protein Donor) |
| O1A | N | THR- 525 | 2.85 | 125.16 | H-Bond (Protein Donor) |
| O1A | N | LEU- 526 | 3.26 | 157.11 | H-Bond (Protein Donor) |
| C3' | CD1 | LEU- 526 | 4.01 | 0 | Hydrophobic |
| C4' | CB | ALA- 685 | 4.38 | 0 | Hydrophobic |
| O2' | OG1 | THR- 688 | 3.12 | 156.62 | H-Bond (Ligand Donor) |
| C1' | CB | THR- 688 | 4.03 | 0 | Hydrophobic |