2.900 Å
X-ray
2013-11-03
Name: | ESX secretion system protein EccC |
---|---|
ID: | D1A4G7_THECD |
AC: | D1A4G7 |
Organism: | Thermomonospora curvata |
Reign: | Bacteria |
TaxID: | 471852 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 85.706 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.707 | 297.000 |
% Hydrophobic | % Polar |
---|---|
56.82 | 43.18 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 53.3 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-63.0823 | -11.9813 | 57.796 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1G | N | GLN- 834 | 3.17 | 172.45 | H-Bond (Protein Donor) |
O3B | N | GLN- 834 | 3.42 | 124.49 | H-Bond (Protein Donor) |
C5' | CG | GLN- 834 | 4.06 | 0 | Hydrophobic |
O2B | N | THR- 835 | 2.95 | 140.32 | H-Bond (Protein Donor) |
O2B | N | GLY- 836 | 3.3 | 171.9 | H-Bond (Protein Donor) |
O3A | N | GLY- 836 | 3.15 | 122.8 | H-Bond (Protein Donor) |
O1G | NZ | LYS- 837 | 3.03 | 122.54 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 837 | 2.59 | 147.97 | H-Bond (Protein Donor) |
O1G | NZ | LYS- 837 | 3.03 | 0 | Ionic (Protein Cationic) |
O2B | NZ | LYS- 837 | 2.59 | 0 | Ionic (Protein Cationic) |
O1B | N | SER- 838 | 2.99 | 151.35 | H-Bond (Protein Donor) |
O1A | OG1 | THR- 839 | 2.71 | 168.53 | H-Bond (Protein Donor) |
O1A | N | THR- 839 | 2.6 | 138.87 | H-Bond (Protein Donor) |
C1' | CB | PRO- 1018 | 3.9 | 0 | Hydrophobic |
N6 | OG1 | THR- 1031 | 2.54 | 138.71 | H-Bond (Ligand Donor) |
N6 | O | THR- 1031 | 2.62 | 125.89 | H-Bond (Ligand Donor) |
O2G | MG | MG- 1402 | 2.06 | 0 | Metal Acceptor |
O1B | MG | MG- 1402 | 2.67 | 0 | Metal Acceptor |