2.900 Å
X-ray
2013-11-03
| Name: | ESX secretion system protein EccC |
|---|---|
| ID: | D1A4G7_THECD |
| AC: | D1A4G7 |
| Organism: | Thermomonospora curvata |
| Reign: | Bacteria |
| TaxID: | 471852 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 85.706 |
|---|---|
| Number of residues: | 35 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.707 | 297.000 |
| % Hydrophobic | % Polar |
|---|---|
| 56.82 | 43.18 |
| According to VolSite | |

| HET Code: | ATP |
|---|---|
| Formula: | C10H12N5O13P3 |
| Molecular weight: | 503.149 g/mol |
| DrugBank ID: | DB00171 |
| Buried Surface Area: | 53.3 % |
| Polar Surface area: | 319.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -63.0823 | -11.9813 | 57.796 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1G | N | GLN- 834 | 3.17 | 172.45 | H-Bond (Protein Donor) |
| O3B | N | GLN- 834 | 3.42 | 124.49 | H-Bond (Protein Donor) |
| C5' | CG | GLN- 834 | 4.06 | 0 | Hydrophobic |
| O2B | N | THR- 835 | 2.95 | 140.32 | H-Bond (Protein Donor) |
| O2B | N | GLY- 836 | 3.3 | 171.9 | H-Bond (Protein Donor) |
| O3A | N | GLY- 836 | 3.15 | 122.8 | H-Bond (Protein Donor) |
| O1G | NZ | LYS- 837 | 3.03 | 122.54 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 837 | 2.59 | 147.97 | H-Bond (Protein Donor) |
| O1G | NZ | LYS- 837 | 3.03 | 0 | Ionic (Protein Cationic) |
| O2B | NZ | LYS- 837 | 2.59 | 0 | Ionic (Protein Cationic) |
| O1B | N | SER- 838 | 2.99 | 151.35 | H-Bond (Protein Donor) |
| O1A | OG1 | THR- 839 | 2.71 | 168.53 | H-Bond (Protein Donor) |
| O1A | N | THR- 839 | 2.6 | 138.87 | H-Bond (Protein Donor) |
| C1' | CB | PRO- 1018 | 3.9 | 0 | Hydrophobic |
| N6 | OG1 | THR- 1031 | 2.54 | 138.71 | H-Bond (Ligand Donor) |
| N6 | O | THR- 1031 | 2.62 | 125.89 | H-Bond (Ligand Donor) |
| O2G | MG | MG- 1402 | 2.06 | 0 | Metal Acceptor |
| O1B | MG | MG- 1402 | 2.67 | 0 | Metal Acceptor |