2.500 Å
X-ray
1998-02-02
Name: | Cell division control protein 42 homolog |
---|---|
ID: | CDC42_HUMAN |
AC: | P60953 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 65.344 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.433 | 506.250 |
% Hydrophobic | % Polar |
---|---|
41.33 | 58.67 |
According to VolSite |
HET Code: | GNH |
---|---|
Formula: | C10H14N6O10P2 |
Molecular weight: | 440.200 g/mol |
DrugBank ID: | DB02623 |
Buried Surface Area: | 57.59 % |
Polar Surface area: | 279.34 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 13 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
103.85 | 31.1987 | -1.62089 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | CB | ALA- 213 | 4.26 | 0 | Hydrophobic |
O3A | N | GLY- 215 | 3.46 | 130.55 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 216 | 2.72 | 142.1 | H-Bond (Protein Donor) |
O2B | N | LYS- 216 | 2.97 | 152.6 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 216 | 2.72 | 0 | Ionic (Protein Cationic) |
O2A | N | CYS- 218 | 3.05 | 152.62 | H-Bond (Protein Donor) |
C2' | SG | CYS- 218 | 3.54 | 0 | Hydrophobic |
C2' | CZ | PHE- 228 | 4.21 | 0 | Hydrophobic |
N1 | OD1 | ASP- 318 | 2.77 | 177.28 | H-Bond (Ligand Donor) |
N1 | OD2 | ASP- 318 | 3.49 | 128.96 | H-Bond (Ligand Donor) |
N2 | OD2 | ASP- 318 | 2.67 | 173.06 | H-Bond (Ligand Donor) |
O6 | N | ALA- 359 | 2.82 | 134.97 | H-Bond (Protein Donor) |
O6 | N | LEU- 360 | 3.49 | 152.64 | H-Bond (Protein Donor) |