2.100 Å
X-ray
2007-09-13
Name: | ATP synthase subunit alpha |
---|---|
ID: | ATPA_THEMA |
AC: | Q9X1U7 |
Organism: | Thermotoga maritima |
Reign: | Bacteria |
TaxID: | 243274 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 36.049 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 3 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.242 | 702.000 |
% Hydrophobic | % Polar |
---|---|
42.31 | 57.69 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 51.21 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
60.1939 | 6.87619 | 89.7428 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1G | N | GLN- 173 | 3.12 | 152.85 | H-Bond (Protein Donor) |
O3B | N | GLN- 173 | 3.08 | 135.21 | H-Bond (Protein Donor) |
O3B | NE2 | GLN- 173 | 3.03 | 122.68 | H-Bond (Protein Donor) |
O1B | N | THR- 174 | 3.23 | 139.72 | H-Bond (Protein Donor) |
O1B | N | GLY- 175 | 3.24 | 132.02 | H-Bond (Protein Donor) |
O3A | N | GLY- 175 | 2.89 | 128.02 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 176 | 2.8 | 158.46 | H-Bond (Protein Donor) |
O1B | N | LYS- 176 | 3.04 | 161.15 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 176 | 2.8 | 0 | Ionic (Protein Cationic) |
O2B | N | THR- 177 | 2.96 | 172.23 | H-Bond (Protein Donor) |
O2A | N | ALA- 178 | 2.79 | 148.08 | H-Bond (Protein Donor) |
C4' | CZ | PHE- 350 | 3.97 | 0 | Hydrophobic |
C1' | CZ | PHE- 350 | 4.22 | 0 | Hydrophobic |
N6 | O | GLN- 423 | 2.85 | 165.76 | H-Bond (Ligand Donor) |
O2' | NE2 | GLN- 425 | 2.72 | 163.37 | H-Bond (Protein Donor) |
O2G | MG | MG- 504 | 2.13 | 0 | Metal Acceptor |
O2B | MG | MG- 504 | 2.25 | 0 | Metal Acceptor |
O1G | O | HOH- 553 | 2.6 | 179.96 | H-Bond (Protein Donor) |