2.300 Å
X-ray
2009-11-03
Name: | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC |
---|---|
ID: | Q3ACS5_CARHZ |
AC: | Q3ACS5 |
Organism: | Carboxydothermus hydrogenoformans |
Reign: | Bacteria |
TaxID: | 246194 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 48.048 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.520 | 367.875 |
% Hydrophobic | % Polar |
---|---|
39.45 | 60.55 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 66.56 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
9.368 | -29.0021 | -44.4819 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2B | N | GLY- 10 | 2.93 | 165.21 | H-Bond (Protein Donor) |
O3B | N | GLY- 10 | 3.22 | 121.47 | H-Bond (Protein Donor) |
O3B | N | GLY- 12 | 2.6 | 130.04 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 13 | 3.61 | 0 | Ionic (Protein Cationic) |
O3B | N | LYS- 13 | 2.97 | 152.22 | H-Bond (Protein Donor) |
O1B | OG1 | THR- 14 | 2.53 | 154.07 | H-Bond (Protein Donor) |
O1B | N | THR- 14 | 2.96 | 144.74 | H-Bond (Protein Donor) |
O2A | OG1 | THR- 15 | 2.64 | 168.09 | H-Bond (Protein Donor) |
O2A | N | THR- 15 | 2.81 | 151.83 | H-Bond (Protein Donor) |
O2B | OG | SER- 40 | 3 | 138.78 | H-Bond (Protein Donor) |
N7 | ND2 | ASN- 191 | 3.11 | 160.98 | H-Bond (Protein Donor) |
N6 | OD1 | ASN- 191 | 2.89 | 124.69 | H-Bond (Ligand Donor) |
O4' | NZ | LYS- 192 | 3.24 | 153.64 | H-Bond (Protein Donor) |
N6 | O | PRO- 216 | 3.21 | 174.57 | H-Bond (Ligand Donor) |
N1 | N | ASN- 218 | 2.98 | 167.01 | H-Bond (Protein Donor) |