2.300 Å
X-ray
2009-11-03
| Name: | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC |
|---|---|
| ID: | Q3ACS5_CARHZ |
| AC: | Q3ACS5 |
| Organism: | Carboxydothermus hydrogenoformans |
| Reign: | Bacteria |
| TaxID: | 246194 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 48.048 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.520 | 367.875 |
| % Hydrophobic | % Polar |
|---|---|
| 39.45 | 60.55 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 66.56 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 9.368 | -29.0021 | -44.4819 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2B | N | GLY- 10 | 2.93 | 165.21 | H-Bond (Protein Donor) |
| O3B | N | GLY- 10 | 3.22 | 121.47 | H-Bond (Protein Donor) |
| O3B | N | GLY- 12 | 2.6 | 130.04 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 13 | 3.61 | 0 | Ionic (Protein Cationic) |
| O3B | N | LYS- 13 | 2.97 | 152.22 | H-Bond (Protein Donor) |
| O1B | OG1 | THR- 14 | 2.53 | 154.07 | H-Bond (Protein Donor) |
| O1B | N | THR- 14 | 2.96 | 144.74 | H-Bond (Protein Donor) |
| O2A | OG1 | THR- 15 | 2.64 | 168.09 | H-Bond (Protein Donor) |
| O2A | N | THR- 15 | 2.81 | 151.83 | H-Bond (Protein Donor) |
| O2B | OG | SER- 40 | 3 | 138.78 | H-Bond (Protein Donor) |
| N7 | ND2 | ASN- 191 | 3.11 | 160.98 | H-Bond (Protein Donor) |
| N6 | OD1 | ASN- 191 | 2.89 | 124.69 | H-Bond (Ligand Donor) |
| O4' | NZ | LYS- 192 | 3.24 | 153.64 | H-Bond (Protein Donor) |
| N6 | O | PRO- 216 | 3.21 | 174.57 | H-Bond (Ligand Donor) |
| N1 | N | ASN- 218 | 2.98 | 167.01 | H-Bond (Protein Donor) |