2.800 Å
X-ray
2002-02-22
Name: | Myosin heavy chain, striated muscle |
---|---|
ID: | MYS_ARGIR |
AC: | P24733 |
Organism: | Argopecten irradians |
Reign: | Eukaryota |
TaxID: | 31199 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 74.056 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.364 | 644.625 |
% Hydrophobic | % Polar |
---|---|
38.22 | 61.78 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 63.08 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-3.45496 | 9.26574 | -3.38048 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | CE2 | TYR- 126 | 4.05 | 0 | Hydrophobic |
C1' | CD2 | TYR- 126 | 3.48 | 0 | Hydrophobic |
N6 | OH | TYR- 132 | 3.31 | 158.73 | H-Bond (Ligand Donor) |
O3B | N | GLY- 179 | 3.07 | 150.35 | H-Bond (Protein Donor) |
O1B | N | GLY- 181 | 3.3 | 130.02 | H-Bond (Protein Donor) |
O2B | N | THR- 183 | 2.65 | 144.69 | H-Bond (Protein Donor) |
C3' | CG | GLU- 184 | 4.39 | 0 | Hydrophobic |
O2B | MG | MG- 903 | 1.91 | 0 | Metal Acceptor |