Å
NMR
2014-07-29
Name: | MHC class I alpha chain |
---|---|
ID: | A0A024RAV5_H |
AC: | A0A024 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 10.000 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.927 | 364.500 |
% Hydrophobic | % Polar |
---|---|
52.78 | 47.22 |
According to VolSite |
HET Code: | GDP |
---|---|
Formula: | C10H12N5O11P2 |
Molecular weight: | 440.177 g/mol |
DrugBank ID: | DB04315 |
Buried Surface Area: | 67.07 % |
Polar Surface area: | 276.39 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
23.9472 | 12.6019 | -37.3413 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3B | N | GLY- 13 | 3.08 | 130.51 | H-Bond (Protein Donor) |
O3B | N | GLY- 15 | 3.07 | 168.52 | H-Bond (Protein Donor) |
O3A | N | GLY- 15 | 3.22 | 121.79 | H-Bond (Protein Donor) |
O1B | N | SER- 17 | 3.03 | 174.65 | H-Bond (Protein Donor) |
O2A | N | ALA- 18 | 3.05 | 139.68 | H-Bond (Protein Donor) |
C2' | CZ | PHE- 28 | 4.13 | 0 | Hydrophobic |
O2' | O | VAL- 29 | 3.37 | 161.07 | H-Bond (Ligand Donor) |
O3' | O | ASP- 30 | 3.03 | 159.28 | H-Bond (Ligand Donor) |
N7 | ND2 | ASN- 116 | 2.99 | 144.09 | H-Bond (Protein Donor) |
N1 | OD1 | ASP- 119 | 3.5 | 165.94 | H-Bond (Ligand Donor) |
O6 | N | ALA- 146 | 2.9 | 122.86 | H-Bond (Protein Donor) |
O6 | N | LYS- 147 | 3.35 | 140.58 | H-Bond (Protein Donor) |