Å
NMR
2014-07-29
| Name: | MHC class I alpha chain |
|---|---|
| ID: | A0A024RAV5_H |
| AC: | A0A024 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 10.000 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.927 | 364.500 |
| % Hydrophobic | % Polar |
|---|---|
| 52.78 | 47.22 |
| According to VolSite | |

| HET Code: | GDP |
|---|---|
| Formula: | C10H12N5O11P2 |
| Molecular weight: | 440.177 g/mol |
| DrugBank ID: | DB04315 |
| Buried Surface Area: | 67.07 % |
| Polar Surface area: | 276.39 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 23.9472 | 12.6019 | -37.3413 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O3B | N | GLY- 13 | 3.08 | 130.51 | H-Bond (Protein Donor) |
| O3B | N | GLY- 15 | 3.07 | 168.52 | H-Bond (Protein Donor) |
| O3A | N | GLY- 15 | 3.22 | 121.79 | H-Bond (Protein Donor) |
| O1B | N | SER- 17 | 3.03 | 174.65 | H-Bond (Protein Donor) |
| O2A | N | ALA- 18 | 3.05 | 139.68 | H-Bond (Protein Donor) |
| C2' | CZ | PHE- 28 | 4.13 | 0 | Hydrophobic |
| O2' | O | VAL- 29 | 3.37 | 161.07 | H-Bond (Ligand Donor) |
| O3' | O | ASP- 30 | 3.03 | 159.28 | H-Bond (Ligand Donor) |
| N7 | ND2 | ASN- 116 | 2.99 | 144.09 | H-Bond (Protein Donor) |
| N1 | OD1 | ASP- 119 | 3.5 | 165.94 | H-Bond (Ligand Donor) |
| O6 | N | ALA- 146 | 2.9 | 122.86 | H-Bond (Protein Donor) |
| O6 | N | LYS- 147 | 3.35 | 140.58 | H-Bond (Protein Donor) |