sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4iok | ADP | Formate--tetrahydrofolate ligase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 1.002 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.870 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.793 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.764 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.750 | |
| 1eve | E20 | Acetylcholinesterase | 3.1.1.7 | 0.744 | |
| 1hpz | AAP | Gag-Pol polyprotein | 2.7.7.49 | 0.744 | |
| 1jum | BER | HTH-type transcriptional regulator QacR | / | 0.744 | |
| 1kbo | 340 | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.744 | |
| 1m67 | BOA | Glycerol-3-phosphate dehydrogenase [NAD(+)], glycosomal | 1.1.1.8 | 0.744 | |
| 1qvu | PRL | HTH-type transcriptional regulator QacR | / | 0.744 | |
| 1sqi | 869 | 4-hydroxyphenylpyruvate dioxygenase | / | 0.744 | |
| 1xmv | ADP | Protein RecA | / | 0.744 | |
| 2aou | CQA | Histamine N-methyltransferase | 2.1.1.8 | 0.744 | |
| 2f98 | NGV | Aklanonic acid methyl ester cyclase AcmA | 5.5.1.23 | 0.744 | |
| 2g97 | DGB | Nicotinamide phosphoribosyltransferase | 2.4.2.12 | 0.744 | |
| 2gz7 | D3F | Orf1a polyprotein | / | 0.744 | |
| 2l98 | STL | Troponin C, slow skeletal and cardiac muscles | / | 0.744 | |
| 2vcq | D25 | Hematopoietic prostaglandin D synthase | / | 0.744 | |
| 2vcw | ZZA | Hematopoietic prostaglandin D synthase | / | 0.744 | |
| 2x20 | PID | Peridinin-chlorophyll a-binding protein 1, chloroplastic | / | 0.744 | |
| 2xuj | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.744 | |
| 2ybu | CX9 | Acidic mammalian chitinase | 3.2.1.14 | 0.744 | |
| 3arv | SAU | Chitinase A | / | 0.744 | |
| 3arz | I5I | Chitinase A | / | 0.744 | |
| 3dyl | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.744 | |
| 3dys | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.744 | |
| 3f8c | HT1 | Transcriptional regulator, PadR-like family | / | 0.744 | |
| 3fnu | 006 | HAP protein | / | 0.744 | |
| 3hth | PRL | EbrA repressor | / | 0.744 | |
| 3hyw | DCQ | Sulfide-quinone reductase | / | 0.744 | |
| 3iis | PID | Peridinin-chlorophyll a-binding protein 1, chloroplastic | / | 0.744 | |
| 3irx | UDR | Gag-Pol polyprotein | 2.7.7.49 | 0.744 | |
| 3kxo | KXO | Hematopoietic prostaglandin D synthase | / | 0.744 | |
| 3mdv | CL6 | Cholesterol 24-hydroxylase | / | 0.744 | |
| 3nf7 | CIW | Gag-Pol polyprotein | / | 0.744 | |
| 3ox3 | 4X4 | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 0.744 | |
| 4b1f | KRH | Glutamate racemase | / | 0.744 | |
| 4bbx | LKF | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A | 3.1.4.17 | 0.744 | |
| 4chz | H75 | Integrase | / | 0.744 | |
| 4cjw | CBJ | Integrase | / | 0.744 | |
| 4dyp | 0MS | Nucleoprotein | / | 0.744 | |
| 4e4q | RRH | Peroxisome proliferator-activated receptor gamma | / | 0.744 | |
| 4fiz | CUE | 17beta-hydroxysteroid dehydrogenase | / | 0.744 | |
| 4fj1 | GEN | 17beta-hydroxysteroid dehydrogenase | / | 0.744 | |
| 4fj2 | QSO | 17beta-hydroxysteroid dehydrogenase | / | 0.744 | |
| 4hg7 | NUT | E3 ubiquitin-protein ligase Mdm2 | 6.3.2 | 0.744 | |
| 4i8v | BHF | Cytochrome P450 1A1 | 1.14.14.1 | 0.744 | |
| 4ra3 | TFX | Beta-2-microglobulin | / | 0.744 | |
| 2zts | ADP | Uncharacterized protein | / | 0.742 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.740 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.739 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.739 | |
| 4dsu | GDP | GTPase KRas | / | 0.739 | |
| 4l8g | GDP | GTPase KRas | / | 0.739 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.738 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.735 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.735 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.732 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.732 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.731 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.731 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.731 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.729 | |
| 2zr9 | DTP | Protein RecA | / | 0.729 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.729 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.729 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.728 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.728 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.728 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.728 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.727 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.726 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.726 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.726 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.725 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.725 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.725 | |
| 4wa7 | GDP | GTPase KRas | / | 0.725 | |
| 4ldj | GDP | GTPase KRas | / | 0.723 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.722 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.722 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.721 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.721 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.721 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.721 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.720 | |
| 1nly | AGS | Cag alpha | / | 0.720 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.720 | |
| 3kjg | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.720 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.719 | |
| 4tq9 | GDP | GTPase KRas | / | 0.719 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.718 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.718 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.718 | |
| 5bn3 | ADP | NEQ263 | / | 0.718 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.717 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.717 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.717 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.717 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.717 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.715 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.715 | |
| 4l9s | GDP | GTPase HRas | / | 0.715 | |
| 4luc | GDP | GTPase KRas | / | 0.714 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.713 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.712 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.712 | |
| 4jlo | ADP | Adenylate kinase | / | 0.712 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.711 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.711 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.711 | |
| 2fna | ADP | Uncharacterized protein | / | 0.710 | |
| 3k9l | GNP | GTPase HRas | / | 0.710 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.710 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.710 | |
| 4ql3 | GDP | GTPase KRas | / | 0.710 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.709 | |
| 4epx | GDP | GTPase KRas | / | 0.709 | |
| 4q02 | GDP | GTPase KRas | / | 0.709 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.709 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.708 | |
| 2i1v | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.708 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.708 | |
| 3k8y | GNP | GTPase HRas | / | 0.708 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.708 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.708 | |
| 4q03 | GDP | GTPase KRas | / | 0.708 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.708 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.707 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.707 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.707 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.707 | |
| 3rs5 | GNP | GTPase HRas | / | 0.707 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.707 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.706 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.706 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.706 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.706 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.706 | |
| 3thy | ADP | DNA mismatch repair protein Msh2 | / | 0.706 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.706 | |
| 5cyo | GDP | Septin-9 | / | 0.706 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.705 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.705 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.705 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.705 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.705 | |
| 4obe | GDP | GTPase KRas | / | 0.705 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.704 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.704 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.703 | |
| 4g0n | GNP | GTPase HRas | / | 0.703 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.703 | |
| 1j7k | ATP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.702 | |
| 3rs7 | GNP | GTPase HRas | / | 0.702 | |
| 4rz3 | ADP | Site-determining protein | / | 0.702 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.702 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.701 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.701 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.701 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.700 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.700 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.700 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.700 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.700 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.699 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.699 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.699 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.699 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.699 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.698 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.698 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.698 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.697 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.697 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.697 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.697 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.697 | |
| 4lv6 | GDP | GTPase KRas | / | 0.697 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.696 | |
| 1sxj | ADP | Replication factor C subunit 5 | / | 0.696 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.696 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.696 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.695 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.695 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.695 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.694 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.694 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.694 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.694 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.694 | |
| 4ike | ADP | Adenylate kinase | / | 0.694 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.694 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.694 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.693 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.693 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.693 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.693 | |
| 2rgb | GNP | GTPase HRas | / | 0.693 | |
| 2rgg | GNP | GTPase HRas | / | 0.693 | |
| 3lbi | GNP | GTPase HRas | / | 0.693 | |
| 3oiu | GNP | GTPase HRas | / | 0.693 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.693 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.693 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.693 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.692 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.692 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.692 | |
| 3lbn | GNP | GTPase HRas | / | 0.692 | |
| 3oiv | GNP | GTPase HRas | / | 0.692 | |
| 3rs0 | GNP | GTPase HRas | / | 0.692 | |
| 4dls | GNP | GTPase HRas | / | 0.692 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.691 | |
| 2g0g | SP0 | Peroxisome proliferator-activated receptor gamma | / | 0.691 | |
| 2g6p | HM2 | Methionine aminopeptidase 1 | / | 0.691 | |
| 2kfx | WW7 | Troponin C, slow skeletal and cardiac muscles | / | 0.691 | |
| 2nq7 | HM5 | Methionine aminopeptidase 1 | / | 0.691 | |
| 2rgc | GNP | GTPase HRas | / | 0.691 | |
| 2vcx | D26 | Hematopoietic prostaglandin D synthase | / | 0.691 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.691 | |
| 2wey | EV1 | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A | 3.1.4.17 | 0.691 | |
| 3mzt | TFX | Beta-2-microglobulin | / | 0.691 | |
| 3v4f | GNP | GTPase HRas | / | 0.691 | |
| 3wi2 | P98 | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A | 3.1.4.17 | 0.691 | |
| 4dlt | GNP | GTPase HRas | / | 0.691 | |
| 4dlv | GNP | GTPase HRas | / | 0.691 | |
| 4fgj | 1PQ | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 0.691 | |
| 4ikr | PVP | Methionine aminopeptidase 1 | / | 0.691 | |
| 4ikt | TFV | Methionine aminopeptidase 1 | / | 0.691 | |
| 4iku | SHX | Methionine aminopeptidase 1 | / | 0.691 | |
| 4jld | ADP | Adenylate kinase | / | 0.691 | |
| 5b2z | GNP | GTPase HRas | / | 0.691 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.690 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.690 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.690 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.690 | |
| 5ftc | ADP | TPR domain protein | / | 0.690 | |
| 3lbh | GNP | GTPase HRas | / | 0.689 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.689 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.689 | |
| 4jky | ADP | Adenylate kinase | / | 0.689 | |
| 4xvq | GNP | GTPase HRas | / | 0.689 | |
| 1n6m | ADP | Protein claret segregational | / | 0.688 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.688 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.688 | |
| 2ce2 | GDP | GTPase HRas | / | 0.688 | |
| 3kud | GDP | GTPase HRas | / | 0.688 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.688 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.687 | |
| 2rge | GNP | GTPase HRas | / | 0.687 | |
| 3ddc | GNP | GTPase HRas | / | 0.687 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.687 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.687 | |
| 4ma4 | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.687 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.686 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.686 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.685 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.685 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.684 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.684 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.684 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.684 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.684 | |
| 4o3m | ADP | Bloom syndrome protein | 3.6.4.12 | 0.684 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.683 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.683 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.682 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.682 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.682 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.681 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.680 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.680 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.679 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.679 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.679 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.679 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.679 | |
| 4dso | GSP | GTPase KRas | / | 0.679 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.679 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.679 | |
| 4xvr | GNP | GTPase HRas | / | 0.679 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.678 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.678 | |
| 4lrw | GDP | GTPase KRas | / | 0.678 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.678 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.677 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.677 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.677 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.677 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.677 | |
| 2zrj | AGS | Protein RecA | / | 0.677 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.677 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.677 | |
| 1g6o | ADP | Cag alpha | / | 0.676 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.676 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.675 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.675 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.675 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.674 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.674 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.674 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.674 | |
| 4eht | ADP | 2-hydroxyisocaproyl-CoA dehydratase activator | / | 0.674 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.674 | |
| 5ftf | ADP | TPR domain protein | / | 0.674 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.673 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.673 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.673 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.672 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.672 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.671 | |
| 4epw | GDP | GTPase KRas | / | 0.671 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.671 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.670 | |
| 4dlw | GNP | GTPase HRas | / | 0.670 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.670 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.670 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.670 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.669 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.668 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.668 | |
| 4dsn | GCP | GTPase KRas | / | 0.668 | |
| 4iei | ADP | Gene 2 protein | / | 0.668 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.668 | |
| 1ake | AP5 | Adenylate kinase | / | 0.667 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.667 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.667 | |
| 1lfd | GNP | GTPase HRas | / | 0.666 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.665 | |
| 1piw | NAP | NADP-dependent alcohol dehydrogenase 6 | 1.1.1.2 | 0.665 | |
| 1xms | ANP | Protein RecA | / | 0.665 | |
| 1zio | AP5 | Adenylate kinase | / | 0.665 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.665 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.664 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.664 | |
| 2q2y | ADP | Kinesin-like protein KIF11 | / | 0.664 | |
| 2zro | ADP | Protein RecA | / | 0.664 | |
| 3nbx | ADP | ATPase RavA | 3.6.3 | 0.664 | |
| 4lpk | GDP | GTPase KRas | / | 0.664 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.664 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.663 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.662 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.661 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.661 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.661 | |
| 4dlz | GNP | GTPase HRas | / | 0.661 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.661 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.660 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.660 | |
| 3cne | FMN | Putative protease I | / | 0.660 | |
| 3pm0 | BHF | Cytochrome P450 1B1 | / | 0.660 | |
| 4bfq | 083 | Soluble acetylcholine receptor | / | 0.660 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.660 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.660 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.659 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.659 | |
| 4nyj | GNP | GTPase HRas | / | 0.659 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.659 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.658 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.658 | |
| 4mkh | AP5 | Adenylate kinase | / | 0.658 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.657 | |
| 1um0 | FMN | Chorismate synthase | / | 0.657 | |
| 3l1c | ADP | Protein claret segregational | / | 0.657 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.657 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.657 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 0.656 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.656 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.656 | |
| 3qdl | FMN | Oxygen-insensitive NADPH nitroreductase | / | 0.656 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.655 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.655 | |
| 2whx | ADP | Genome polyprotein | 3.4.21.91 | 0.655 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.655 | |
| 3r9x | GNP | GTPase Era | / | 0.655 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.654 | |
| 3szf | DCQ | Sulfide-quinone reductase | / | 0.654 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.653 | |
| 3af0 | GDP | Pantothenate kinase | 2.7.1.33 | 0.653 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.652 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.652 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.652 | |
| 5erm | 210 | Fusicoccadiene synthase | 4.2.3.43 | 0.652 | |
| 2zsb | ADP | Pantothenate kinase | 2.7.1.33 | 0.651 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.651 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.650 |