1.990 Å
X-ray
2008-03-25
| Name: | Putative protease I |
|---|---|
| ID: | Q8A8A4_BACTN |
| AC: | Q8A8A4 |
| Organism: | Bacteroides thetaiotaomicron |
| Reign: | Bacteria |
| TaxID: | 226186 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 50 % |
| C | 50 % |
| B-Factor: | 27.124 |
|---|---|
| Number of residues: | 18 |
| Including | |
| Standard Amino Acids: | 16 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.764 | 648.000 |
| % Hydrophobic | % Polar |
|---|---|
| 42.19 | 57.81 |
| According to VolSite | |

| HET Code: | FMN |
|---|---|
| Formula: | C17H19N4O9P |
| Molecular weight: | 454.328 g/mol |
| DrugBank ID: | DB03247 |
| Buried Surface Area: | 34.28 % |
| Polar Surface area: | 217.05 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 12 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| 32.7542 | 6.3148 | 35.0523 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C3' | CB | ASN- 161 | 4.42 | 0 | Hydrophobic |
| C7M | CH2 | TRP- 164 | 4.42 | 0 | Hydrophobic |
| C7M | CH2 | TRP- 164 | 3.73 | 0 | Hydrophobic |
| C8M | CH2 | TRP- 164 | 4.31 | 0 | Hydrophobic |
| C8M | CZ2 | TRP- 164 | 3.93 | 0 | Hydrophobic |
| C1' | CE3 | TRP- 164 | 3.49 | 0 | Hydrophobic |
| C2' | CE2 | TRP- 164 | 4.43 | 0 | Hydrophobic |
| DuAr | DuAr | TRP- 164 | 3.53 | 0 | Aromatic Face/Face |
| DuAr | DuAr | TRP- 164 | 3.54 | 0 | Aromatic Face/Face |