2.500 Å
X-ray
2008-08-27
| Name: | Protein RecA |
|---|---|
| ID: | RECA_MYCS2 |
| AC: | Q59560 |
| Organism: | Mycobacterium smegmatis 155) |
| Reign: | Bacteria |
| TaxID: | 246196 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 42.862 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.219 | 475.875 |
| % Hydrophobic | % Polar |
|---|---|
| 37.59 | 62.41 |
| According to VolSite | |

| HET Code: | DTP |
|---|---|
| Formula: | C10H12N5O12P3 |
| Molecular weight: | 487.150 g/mol |
| DrugBank ID: | DB03222 |
| Buried Surface Area: | 53.75 % |
| Polar Surface area: | 299.64 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 16 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 27.0857 | 7.22657 | -12.4577 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O3B | N | SER- 71 | 2.65 | 152.06 | H-Bond (Protein Donor) |
| O2B | N | SER- 72 | 2.95 | 151.28 | H-Bond (Protein Donor) |
| O2B | N | GLY- 73 | 3.19 | 134.88 | H-Bond (Protein Donor) |
| O3A | N | GLY- 73 | 2.91 | 137.31 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 74 | 3.81 | 0 | Ionic (Protein Cationic) |
| O2B | NZ | LYS- 74 | 2.64 | 0 | Ionic (Protein Cationic) |
| O2B | NZ | LYS- 74 | 2.64 | 158.21 | H-Bond (Protein Donor) |
| O2B | N | LYS- 74 | 3.11 | 154 | H-Bond (Protein Donor) |
| O3G | OG1 | THR- 75 | 3.42 | 138.98 | H-Bond (Protein Donor) |
| O1B | OG1 | THR- 75 | 3.26 | 148.44 | H-Bond (Protein Donor) |
| O1B | N | THR- 75 | 2.99 | 160.95 | H-Bond (Protein Donor) |
| O1A | OG1 | THR- 76 | 2.62 | 163.44 | H-Bond (Protein Donor) |
| O1A | N | THR- 76 | 2.88 | 139.92 | H-Bond (Protein Donor) |
| N6 | OD2 | ASP- 102 | 3.17 | 122.79 | H-Bond (Ligand Donor) |
| O3' | NH1 | ARG- 229 | 2.81 | 134.32 | H-Bond (Protein Donor) |
| C4' | CD1 | ILE- 264 | 4.04 | 0 | Hydrophobic |
| C1' | CG2 | ILE- 264 | 4.21 | 0 | Hydrophobic |
| N3 | N | GLY- 267 | 3.17 | 153.54 | H-Bond (Protein Donor) |