2.500 Å
X-ray
2002-07-12
Name: | Glycerol-3-phosphate dehydrogenase [NAD(+)], glycosomal |
---|---|
ID: | GPDA_LEIME |
AC: | P90551 |
Organism: | Leishmania mexicana |
Reign: | Eukaryota |
TaxID: | 5665 |
EC Number: | 1.1.1.8 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 47.745 |
---|---|
Number of residues: | 8 |
Including | |
Standard Amino Acids: | 8 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.048 | 313.875 |
% Hydrophobic | % Polar |
---|---|
68.82 | 31.18 |
According to VolSite |
HET Code: | BOA |
---|---|
Formula: | C5H3BrN4O |
Molecular weight: | 215.008 g/mol |
DrugBank ID: | DB04283 |
Buried Surface Area: | 34.66 % |
Polar Surface area: | 74.69 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 0 |
X | Y | Z |
---|---|---|
34.2224 | 54.7654 | 30.1223 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
BR | CZ3 | TRP- 44 | 3.93 | 0 | Hydrophobic |
BR | CG2 | ILE- 93 | 3.89 | 0 | Hydrophobic |
BR | CB | PHE- 97 | 3.89 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 97 | 3.54 | 0 | Aromatic Face/Face |
BR | CB | PHE- 101 | 4.27 | 0 | Hydrophobic |