2.100 Å
X-ray
2007-09-27
| Min | Mean | Median | Standard Deviation | Max | Count | |
|---|---|---|---|---|---|---|
| pChEMBL: | 6.520 | 6.900 | 6.900 | 0.380 | 7.290 | 2 |
| Name: | Hematopoietic prostaglandin D synthase |
|---|---|
| ID: | HPGDS_HUMAN |
| AC: | O60760 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 22.404 |
|---|---|
| Number of residues: | 22 |
| Including | |
| Standard Amino Acids: | 20 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.902 | 1687.500 |
| % Hydrophobic | % Polar |
|---|---|
| 38.60 | 61.40 |
| According to VolSite | |

| HET Code: | D26 |
|---|---|
| Formula: | C12H9N3S |
| Molecular weight: | 227.285 g/mol |
| DrugBank ID: | DB07614 |
| Buried Surface Area: | 63.17 % |
| Polar Surface area: | 69.81 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 2 |
| H-Bond Donors: | 1 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| 32.7614 | -6.72219 | -17.2521 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| S3 | CG | ARG- 14 | 3.97 | 0 | Hydrophobic |
| C18 | CG | ARG- 14 | 3.47 | 0 | Hydrophobic |
| C15 | CE | MET- 99 | 4.24 | 0 | Hydrophobic |
| C17 | CB | MET- 99 | 3.39 | 0 | Hydrophobic |
| DuAr | DuAr | TRP- 104 | 3.83 | 0 | Aromatic Face/Face |
| DuAr | DuAr | TRP- 104 | 3.83 | 0 | Aromatic Face/Face |
| C15 | CG2 | ILE- 155 | 4.46 | 0 | Hydrophobic |
| C16 | SG | CYS- 156 | 4 | 0 | Hydrophobic |