2.100 Å
X-ray
2007-09-27
Min | Mean | Median | Standard Deviation | Max | Count | |
---|---|---|---|---|---|---|
pChEMBL: | 6.520 | 6.900 | 6.900 | 0.380 | 7.290 | 2 |
Name: | Hematopoietic prostaglandin D synthase |
---|---|
ID: | HPGDS_HUMAN |
AC: | O60760 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 22.404 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 20 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.902 | 1687.500 |
% Hydrophobic | % Polar |
---|---|
38.60 | 61.40 |
According to VolSite |
HET Code: | D26 |
---|---|
Formula: | C12H9N3S |
Molecular weight: | 227.285 g/mol |
DrugBank ID: | DB07614 |
Buried Surface Area: | 63.17 % |
Polar Surface area: | 69.81 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 1 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
32.7614 | -6.72219 | -17.2521 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
S3 | CG | ARG- 14 | 3.97 | 0 | Hydrophobic |
C18 | CG | ARG- 14 | 3.47 | 0 | Hydrophobic |
C15 | CE | MET- 99 | 4.24 | 0 | Hydrophobic |
C17 | CB | MET- 99 | 3.39 | 0 | Hydrophobic |
DuAr | DuAr | TRP- 104 | 3.83 | 0 | Aromatic Face/Face |
DuAr | DuAr | TRP- 104 | 3.83 | 0 | Aromatic Face/Face |
C15 | CG2 | ILE- 155 | 4.46 | 0 | Hydrophobic |
C16 | SG | CYS- 156 | 4 | 0 | Hydrophobic |