1.350 Å
X-ray
2012-06-04
Name: | Ribosyldihydronicotinamide dehydrogenase [quinone] |
---|---|
ID: | NQO2_HUMAN |
AC: | P16083 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 50 % |
B | 50 % |
B-Factor: | 13.004 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | FAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.914 | 506.250 |
% Hydrophobic | % Polar |
---|---|
52.67 | 47.33 |
According to VolSite |
HET Code: | 1PQ |
---|---|
Formula: | C15H22N3O |
Molecular weight: | 260.355 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 61.63 % |
Polar Surface area: | 61.79 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
23.5874 | -16.3605 | -14.7199 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1 | CH2 | TRP- 105 | 3.47 | 0 | Hydrophobic |
C1 | CZ | PHE- 126 | 3.32 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 178 | 3.56 | 0 | Aromatic Face/Face |
DuAr | DuAr | PHE- 178 | 3.56 | 0 | Aromatic Face/Face |
C13 | CB | PHE- 178 | 4.32 | 0 | Hydrophobic |
N2 | OE1 | GLU- 193 | 3.36 | 0 | Ionic (Ligand Cationic) |
N2 | OE2 | GLU- 193 | 3.3 | 0 | Ionic (Ligand Cationic) |
C1 | C6 | FAD- 303 | 3.52 | 0 | Hydrophobic |
C3 | C1' | FAD- 303 | 4.26 | 0 | Hydrophobic |
C7 | C1' | FAD- 303 | 3.9 | 0 | Hydrophobic |