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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.764
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.719
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.686
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.672
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.661
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.658
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.640
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.636
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.630
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.619
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.616
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.613
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.611
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.606
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.604
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.601
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.598
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.597
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.597
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.595
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.590
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.578
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.571
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.557
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.550
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.547
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.527
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.477
2nmtMIMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.464
1qiqACCIsopenicillin N synthase1.21.3.10.457
3v94WYQPhosphodiesterase/0.453
4bfxZVXPantothenate kinase2.7.1.330.453
1m13HYFNuclear receptor subfamily 1 group I member 2/0.450
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.450
3oagLPQRenin3.4.23.150.449
5kgpACOPredicted acetyltransferase/0.449
4bfyZVYPantothenate kinase2.7.1.330.447
2jb4A14Isopenicillin N synthase1.21.3.10.444
3g72A6TRenin3.4.23.150.444
3ha5SFGHydroxymycolate synthase MmaA42.1.10.444
4bj9UHBTankyrase-22.4.2.300.444
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.443
4eb4D16Thymidylate synthase2.1.1.450.442
1blzACVIsopenicillin N synthase1.21.3.10.441
4iarERM5-hydroxytryptamine receptor 1B/0.441