1.800 Å
X-ray
2010-09-21
Name: | Ribosyldihydronicotinamide dehydrogenase [quinone] |
---|---|
ID: | NQO2_HUMAN |
AC: | P16083 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 48 % |
B | 52 % |
B-Factor: | 21.131 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | FAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.017 | 614.250 |
% Hydrophobic | % Polar |
---|---|
48.90 | 51.10 |
According to VolSite |
HET Code: | 4X4 |
---|---|
Formula: | C21H18N4O3 |
Molecular weight: | 374.393 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 61.01 % |
Polar Surface area: | 84.56 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 2 |
Rings: | 5 |
Aromatic rings: | 5 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
-5.05396 | -5.54907 | -15.2903 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C10 | CZ3 | TRP- 105 | 3.4 | 0 | Hydrophobic |
C10 | CE1 | PHE- 126 | 4.47 | 0 | Hydrophobic |
C4 | CZ | PHE- 126 | 3.39 | 0 | Hydrophobic |
C10 | CE2 | PHE- 178 | 3.91 | 0 | Hydrophobic |
C16 | CB | PHE- 178 | 4.27 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 178 | 3.59 | 0 | Aromatic Face/Face |
C3 | C1' | FAD- 232 | 4.46 | 0 | Hydrophobic |
C4 | C7M | FAD- 232 | 4.47 | 0 | Hydrophobic |
C5 | C8M | FAD- 232 | 3.88 | 0 | Hydrophobic |
C10 | C6 | FAD- 232 | 4.28 | 0 | Hydrophobic |
C17 | C1' | FAD- 232 | 4.16 | 0 | Hydrophobic |