1.530 Å
X-ray
2011-12-05
Name: | Ribosyldihydronicotinamide dehydrogenase [quinone] |
---|---|
ID: | NQO2_HUMAN |
AC: | P16083 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 50 % |
B | 50 % |
B-Factor: | 21.857 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | FAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.051 | 489.375 |
% Hydrophobic | % Polar |
---|---|
59.31 | 40.69 |
According to VolSite |
HET Code: | UXH |
---|---|
Formula: | C12H10ClN5O2 |
Molecular weight: | 291.693 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 64.97 % |
Polar Surface area: | 128.32 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
-3.8921 | -5.55255 | -15.7157 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CL1 | CZ2 | TRP- 105 | 3.52 | 0 | Hydrophobic |
C8 | CZ | PHE- 126 | 3.4 | 0 | Hydrophobic |
C4 | CD1 | ILE- 128 | 4.07 | 0 | Hydrophobic |
N15 | OD1 | ASN- 161 | 3.35 | 141.95 | H-Bond (Ligand Donor) |
O16 | ND2 | ASN- 161 | 2.73 | 151.61 | H-Bond (Protein Donor) |
CL1 | C6 | FAD- 302 | 3.23 | 0 | Hydrophobic |
C9 | C1' | FAD- 302 | 4.12 | 0 | Hydrophobic |
C3 | C1' | FAD- 302 | 3.97 | 0 | Hydrophobic |