2.410 Å
X-ray
2010-09-21
Name: | Ribosyldihydronicotinamide dehydrogenase [quinone] |
---|---|
ID: | NQO2_HUMAN |
AC: | P16083 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 57 % |
B | 43 % |
B-Factor: | 31.108 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | FAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.847 | 577.125 |
% Hydrophobic | % Polar |
---|---|
51.46 | 48.54 |
According to VolSite |
HET Code: | 79X |
---|---|
Formula: | C17H13NO4 |
Molecular weight: | 295.289 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 70.47 % |
Polar Surface area: | 60.69 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 1 |
Rings: | 4 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
23.3485 | -14.9727 | -14.0329 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C21 | CE3 | TRP- 105 | 4.26 | 0 | Hydrophobic |
C21 | CE1 | PHE- 106 | 3.39 | 0 | Hydrophobic |
C2 | CZ | PHE- 126 | 3.21 | 0 | Hydrophobic |
C23 | SD | MET- 154 | 4.09 | 0 | Hydrophobic |
O4 | ND2 | ASN- 161 | 2.76 | 148.84 | H-Bond (Protein Donor) |
C21 | CD1 | PHE- 178 | 3.67 | 0 | Hydrophobic |
C11 | C1' | FAD- 232 | 4.32 | 0 | Hydrophobic |
C1 | C7M | FAD- 232 | 3.45 | 0 | Hydrophobic |
C5 | C8M | FAD- 232 | 3.42 | 0 | Hydrophobic |
O1 | O | HOH- 255 | 2.78 | 152.36 | H-Bond (Protein Donor) |