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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.707
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.657
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.615
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.613
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.599
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.597
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.595
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.593
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.592
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.590
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.578
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.573
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.569
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.564
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.562
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.560
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.560
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.553
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.542
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.524
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.518
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.517
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.514
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.511
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.498
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.493
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.492
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.461
1fapRAPPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.456
1fapRAPSerine/threonine-protein kinase mTOR2.7.11.10.456
4bfwZVWPantothenate kinase2.7.1.330.455
4drjRAPSerine/threonine-protein kinase mTOR2.7.11.10.446
4drjRAPPeptidyl-prolyl cis-trans isomerase FKBP45.2.1.80.446
4iarERM5-hydroxytryptamine receptor 1B/0.442
5irnADPNucleotide binding oligomerization domain containing 2/0.440