1.980 Å
X-ray
2009-02-17
Name: | Ribosyldihydronicotinamide dehydrogenase [quinone] |
---|---|
ID: | NQO2_HUMAN |
AC: | P16083 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 32 % |
B | 68 % |
B-Factor: | 26.440 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | FAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.581 | 583.875 |
% Hydrophobic | % Polar |
---|---|
47.40 | 52.60 |
According to VolSite |
HET Code: | MXX |
---|---|
Formula: | C13H15NO3 |
Molecular weight: | 233.263 g/mol |
DrugBank ID: | DB08228 |
Buried Surface Area: | 59.62 % |
Polar Surface area: | 38.77 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 0 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
23.4367 | -16.9914 | -15.1016 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C14 | CH2 | TRP- 105 | 3.36 | 0 | Hydrophobic |
C15 | CZ3 | TRP- 105 | 4.13 | 0 | Hydrophobic |
C15 | CE1 | PHE- 106 | 4.35 | 0 | Hydrophobic |
C14 | CZ | PHE- 126 | 3.63 | 0 | Hydrophobic |
O17 | ND2 | ASN- 161 | 2.86 | 166.37 | H-Bond (Protein Donor) |
C14 | CE2 | PHE- 178 | 4.35 | 0 | Hydrophobic |
C15 | CE1 | PHE- 178 | 3.47 | 0 | Hydrophobic |
C13 | C1' | FAD- 232 | 4.13 | 0 | Hydrophobic |
C14 | C6 | FAD- 232 | 3.62 | 0 | Hydrophobic |
C5 | C1' | FAD- 232 | 3.67 | 0 | Hydrophobic |