Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.677
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.607
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.574
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.555
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.554
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.538
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.534
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.529
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.521
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.516
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.513
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.507
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.501
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.497
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.480
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.479
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.474
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.471
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.470
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.465
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.465
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.458
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.457
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.454
4qofFMNRibosyldihydronicotinamide dehydrogenase [quinone]/0.449
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.446
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.446
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.445
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.443
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.440