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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.692
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.678
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.632
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.629
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.612
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.611
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.610
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.608
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.591
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.591
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.587
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.585
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.583
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.583
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.583
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.582
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.573
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.571
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.571
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.562
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.559
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.549
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.548
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.547
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.524
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.521
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.502
1h66RH1NAD(P)H dehydrogenase [quinone] 11.6.5.20.485
1kbo340NAD(P)H dehydrogenase [quinone] 11.6.5.20.480
1hfqMOTDihydrofolate reductase1.5.1.30.478
2vt4P32Beta-1 adrenergic receptor/0.471
4bfwZVWPantothenate kinase2.7.1.330.471
1pqc444Oxysterols receptor LXR-beta/0.470
4bfxZVXPantothenate kinase2.7.1.330.470
4tnzTTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.469
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.467
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.464
4bftZVTPantothenate kinase2.7.1.330.462
1obnASVIsopenicillin N synthase1.21.3.10.461
4bfuZVUPantothenate kinase2.7.1.330.460
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.458
1gg5E09NAD(P)H dehydrogenase [quinone] 11.6.5.20.457
3fhxPLPPyridoxal kinase2.7.1.350.457
3nxvD2FDihydrofolate reductase1.5.1.30.456
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.456
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.454
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.454
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.451
2fhjH4ZFormylmethanofuran--tetrahydromethanopterin formyltransferase2.3.1.1010.450
4jq4IMNAldo-keto reductase family 1 member C2/0.450
3arvSAUChitinase A/0.449
4bvnP32Beta-1 adrenergic receptor/0.449
4b4w9L9Bifunctional protein FolD/0.448
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.448
4bfvZVVPantothenate kinase2.7.1.330.448
4j531J4Serine/threonine-protein kinase PLK12.7.11.210.448
1qiqACCIsopenicillin N synthase1.21.3.10.447
2fs4PZ1Renin3.4.23.150.447
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.446
4bfsZVSPantothenate kinase2.7.1.330.446
4qfzTTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.446
2aouCQAHistamine N-methyltransferase2.1.1.80.445
2cekN8TAcetylcholinesterase3.1.1.70.445
2xytTC9Soluble acetylcholine receptor/0.445
2ycyP32Beta-1 adrenergic receptor/0.445
1vkgCRIHistone deacetylase 83.5.1.980.444
2gpjFADSiderophore-interacting protein/0.444
4to2DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.444
2b365PPEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.443
3nxrD2DDihydrofolate reductase1.5.1.30.442
2bf4FADNADPH--cytochrome P450 reductase/0.441
2pbzATPUncharacterized protein/0.441
2yczI32Beta-1 adrenergic receptor/0.441
1k4mNADNicotinate-nucleotide adenylyltransferase2.7.7.180.440
2lfoGCHFatty acid-binding protein, liver/0.440