1.970 Å
X-ray
2015-05-18
Name: | Ribosyldihydronicotinamide dehydrogenase [quinone] |
---|---|
ID: | NQO2_HUMAN |
AC: | P16083 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 53 % |
B | 47 % |
B-Factor: | 23.084 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | FAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.954 | 573.750 |
% Hydrophobic | % Polar |
---|---|
52.94 | 47.06 |
According to VolSite |
HET Code: | DM2 |
---|---|
Formula: | C27H28NO11 |
Molecular weight: | 542.511 g/mol |
DrugBank ID: | DB00997 |
Buried Surface Area: | 50.2 % |
Polar Surface area: | 213.34 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 4 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
48.8431 | 5.45105 | 13.9388 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C21 | CH2 | TRP- 105 | 3.46 | 0 | Hydrophobic |
N3' | OE1 | GLN- 122 | 2.93 | 160.45 | H-Bond (Ligand Donor) |
C21 | CE1 | PHE- 126 | 3.68 | 0 | Hydrophobic |
C15 | CE | MET- 154 | 4.13 | 0 | Hydrophobic |
C17 | SD | MET- 154 | 4.36 | 0 | Hydrophobic |
O19 | ND2 | ASN- 161 | 3.2 | 171.63 | H-Bond (Protein Donor) |
DuAr | DuAr | PHE- 178 | 3.71 | 0 | Aromatic Face/Face |
C14 | CG2 | ILE- 194 | 3.89 | 0 | Hydrophobic |
C6' | CG2 | ILE- 194 | 4.06 | 0 | Hydrophobic |
C11 | CG2 | ILE- 194 | 3.67 | 0 | Hydrophobic |
C21 | C6 | FAD- 302 | 3.55 | 0 | Hydrophobic |