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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.630
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.616
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.608
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.602
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.592
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.585
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.584
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.577
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.567
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.566
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.558
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.553
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.545
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.545
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.536
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.532
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.531
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.526
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.524
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.520
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.517
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.516
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.511
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.496
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.496
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.494
4qofFMNRibosyldihydronicotinamide dehydrogenase [quinone]/0.490
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.488
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.482
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.463
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.451