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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/1.000
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.652
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.651
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.611
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.606
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.597
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.596
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.588
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.585
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.584
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.579
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.571
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.567
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.562
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.552
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.551
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.550
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.548
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.545
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.542
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.539
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.538
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.534
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.526
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.515
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.510
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.490
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.490
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.451