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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.765
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.704
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.666
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.653
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.651
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.637
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.633
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.631
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.630
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.629
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.624
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.615
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.614
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.609
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.609
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.606
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.603
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.598
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.598
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.594
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.586
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.586
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.575
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.564
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.560
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.549
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.539
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.535
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.520
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.511
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.465
2nmtMIMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.450
5kgpACOPredicted acetyltransferase/0.442
1g3mPCQEstrogen sulfotransferase2.8.2.40.440