sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 1.075 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.947 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.945 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.942 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.941 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.935 | |
| 3ref | GDP | Rho family GTPase | / | 0.933 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.926 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.923 | |
| 4q02 | GDP | GTPase KRas | / | 0.909 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.906 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.905 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.905 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.898 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.898 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.898 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.897 | |
| 4q03 | GDP | GTPase KRas | / | 0.897 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.896 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.896 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.895 | |
| 4lpk | GDP | GTPase KRas | / | 0.895 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.894 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.894 | |
| 4lv6 | GDP | GTPase KRas | / | 0.894 | |
| 4epx | GDP | GTPase KRas | / | 0.893 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.892 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.892 | |
| 4dsu | GDP | GTPase KRas | / | 0.892 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.892 | |
| 4mit | GTP | Rho-related protein racC | / | 0.892 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.892 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.891 | |
| 4epw | GDP | GTPase KRas | / | 0.891 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.889 | |
| 3kud | GDP | GTPase HRas | / | 0.889 | |
| 4tq9 | GDP | GTPase KRas | / | 0.889 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.888 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.888 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.888 | |
| 4g0n | GNP | GTPase HRas | / | 0.888 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.888 | |
| 4l9s | GDP | GTPase HRas | / | 0.887 | |
| 4ql3 | GDP | GTPase KRas | / | 0.886 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.885 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.885 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.885 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.884 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.881 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.879 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.879 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.879 | |
| 4luc | GDP | GTPase KRas | / | 0.878 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.876 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.876 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.876 | |
| 4dvg | GSP | Rho family GTPase | / | 0.876 | |
| 4l8g | GDP | GTPase KRas | / | 0.875 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.874 | |
| 4dso | GSP | GTPase KRas | / | 0.874 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.873 | |
| 4wa7 | GDP | GTPase KRas | / | 0.871 | |
| 2ce2 | GDP | GTPase HRas | / | 0.868 | |
| 4ldj | GDP | GTPase KRas | / | 0.863 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.861 | |
| 4obe | GDP | GTPase KRas | / | 0.859 | |
| 2c5l | GTP | GTPase HRas | / | 0.858 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.858 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 0.858 | |
| 4k81 | GTP | GTPase HRas | / | 0.855 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.852 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.850 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.849 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.847 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.844 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.844 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.843 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.843 | |
| 4dls | GNP | GTPase HRas | / | 0.842 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.841 | |
| 3oiu | GNP | GTPase HRas | / | 0.841 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.841 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.841 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.840 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.840 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.840 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.838 | |
| 3rs5 | GNP | GTPase HRas | / | 0.838 | |
| 4l9w | GNP | GTPase HRas | / | 0.838 | |
| 2fna | ADP | Uncharacterized protein | / | 0.837 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.836 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.834 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.833 | |
| 3lbh | GNP | GTPase HRas | / | 0.833 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.832 | |
| 3rsl | GNP | GTPase HRas | / | 0.832 | |
| 3lbi | GNP | GTPase HRas | / | 0.831 | |
| 4dsn | GCP | GTPase KRas | / | 0.831 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 0.830 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.830 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.830 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.829 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.828 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.827 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.827 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.827 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.827 | |
| 4xvq | GNP | GTPase HRas | / | 0.827 | |
| 3tgp | GNP | GTPase HRas | / | 0.826 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.826 | |
| 2rge | GNP | GTPase HRas | / | 0.824 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.824 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.823 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.823 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.822 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.821 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.821 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.821 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.821 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.821 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.818 | |
| 3rs0 | GNP | GTPase HRas | / | 0.818 | |
| 3v4f | GNP | GTPase HRas | / | 0.818 | |
| 4dlt | GNP | GTPase HRas | / | 0.818 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.818 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.817 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.817 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.817 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.817 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.816 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.816 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.816 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.815 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.815 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.815 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.813 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.812 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.812 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.812 | |
| 3k9l | GNP | GTPase HRas | / | 0.812 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.812 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.810 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.810 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 0.810 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.810 | |
| 2rgb | GNP | GTPase HRas | / | 0.809 | |
| 2rgg | GNP | GTPase HRas | / | 0.809 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.807 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.807 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.806 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.806 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.806 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.805 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.805 | |
| 4dlx | GNP | GTPase HRas | / | 0.804 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.804 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.803 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.803 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.803 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.803 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.803 | |
| 4xvr | GNP | GTPase HRas | / | 0.803 | |
| 3ddc | GNP | GTPase HRas | / | 0.802 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.802 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.802 | |
| 4dlv | GNP | GTPase HRas | / | 0.802 | |
| 5b2z | GNP | GTPase HRas | / | 0.802 | |
| 2rgc | GNP | GTPase HRas | / | 0.801 | |
| 3lbn | GNP | GTPase HRas | / | 0.801 | |
| 3oiv | GNP | GTPase HRas | / | 0.801 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.801 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.801 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.800 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.800 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.799 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.799 | |
| 4lrw | GDP | GTPase KRas | / | 0.799 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.797 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.796 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.796 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.795 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.794 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.794 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.794 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.793 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.792 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.792 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.792 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.792 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.791 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.791 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.791 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.790 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.790 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.789 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.789 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.787 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.786 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.785 | |
| 2zts | ADP | Uncharacterized protein | / | 0.785 | |
| 3l8y | GNP | GTPase HRas | / | 0.785 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.784 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.783 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.783 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.782 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.782 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.782 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.782 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.782 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.780 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.780 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.780 | |
| 2rgx | AP5 | Adenylate kinase | / | 0.779 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.778 | |
| 1lfd | GNP | GTPase HRas | / | 0.776 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.774 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.773 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.773 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.773 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.772 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.772 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.772 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.772 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.771 | |
| 2cl6 | CAG | GTPase HRas | / | 0.771 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.771 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.770 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.770 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.769 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.769 | |
| 5cyo | GDP | Septin-9 | / | 0.769 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.768 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.766 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.766 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.766 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.765 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.763 | |
| 5ftc | ADP | TPR domain protein | / | 0.763 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.762 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.762 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.760 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.759 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.759 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.758 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.758 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.757 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.757 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.757 | |
| 4v02 | ATP | Site-determining protein | / | 0.757 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.756 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.756 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.756 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.756 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.756 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.756 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.755 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.755 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.755 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.754 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.754 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.754 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.753 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.753 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.752 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.750 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.749 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.749 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.749 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.749 | |
| 3ieu | GDP | GTPase Era | / | 0.749 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.749 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.748 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.747 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.747 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.747 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.746 | |
| 4yqf | GDP | Septin-9 | / | 0.746 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.745 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.745 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.744 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.744 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.744 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.743 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.743 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.743 | |
| 4jlo | ADP | Adenylate kinase | / | 0.742 | |
| 4qbi | AP5 | Adenylate kinase | / | 0.742 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.742 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.741 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.740 | |
| 1ake | AP5 | Adenylate kinase | / | 0.739 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.739 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.739 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.738 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.738 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.738 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.738 | |
| 4ike | ADP | Adenylate kinase | / | 0.738 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.738 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.737 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.737 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.737 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.737 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.736 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.736 | |
| 4jld | ADP | Adenylate kinase | / | 0.736 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.736 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.735 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.734 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.734 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.733 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.732 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.732 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.731 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.731 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.730 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.729 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.728 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.727 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.726 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.726 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.726 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.725 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.723 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.723 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.723 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.723 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.722 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.722 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.722 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.722 | |
| 1ank | ANP | Adenylate kinase | / | 0.721 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.721 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.721 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.720 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.720 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.720 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.719 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.718 | |
| 2ad5 | ADP | CTP synthase | / | 0.718 | |
| 1xmv | ADP | Protein RecA | / | 0.717 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.717 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.716 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.716 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.716 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.716 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.716 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.715 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.715 | |
| 1nly | AGS | Cag alpha | / | 0.713 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.713 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.710 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.710 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.710 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.709 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.708 | |
| 3ftq | GNP | Septin-2 | / | 0.708 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.707 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.707 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.707 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.707 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.707 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.707 | |
| 2zro | ADP | Protein RecA | / | 0.705 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.705 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.704 | |
| 4cdg | ADP | Bloom syndrome protein | 3.6.4.12 | 0.704 | |
| 4jky | ADP | Adenylate kinase | / | 0.704 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.703 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.703 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.703 | |
| 4c2u | ANP | DNA helicase | / | 0.702 | |
| 4x8o | AP5 | Adenylate kinase | / | 0.702 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.701 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.701 | |
| 3r9x | GNP | GTPase Era | / | 0.701 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.701 | |
| 4mkh | AP5 | Adenylate kinase | / | 0.701 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.701 | |
| 4tyq | AP5 | Adenylate kinase | / | 0.701 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.700 | |
| 2eck | ADP | Adenylate kinase | / | 0.700 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.700 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.700 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.699 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.698 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.698 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.698 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.698 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.697 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.697 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.697 | |
| 3qi2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.697 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.696 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.696 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.695 | |
| 3l1c | ADP | Protein claret segregational | / | 0.695 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.695 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.694 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.694 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.692 | |
| 4mkf | AP5 | Adenylate kinase | / | 0.692 | |
| 1q12 | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.690 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.688 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.687 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.687 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.686 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.686 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.686 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.686 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.685 | |
| 2osb | AP5 | Adenylate kinase | / | 0.685 | |
| 2whx | ADP | Genome polyprotein | 3.4.21.91 | 0.685 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.685 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.683 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.681 | |
| 1e4y | AP5 | Adenylate kinase | / | 0.680 | |
| 1mab | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.680 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.680 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.679 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.679 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.679 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.679 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.678 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.678 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.677 | |
| 4e03 | ADP | Plasmid partitioning protein ParF | / | 0.676 | |
| 4mkg | AP5 | Adenylate kinase | / | 0.676 | |
| 1j7k | ATP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.675 | |
| 2aky | AP5 | Adenylate kinase | / | 0.675 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.675 | |
| 2uz3 | TTP | Thymidine kinase | / | 0.674 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.673 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.672 | |
| 1l2t | ATP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.671 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.671 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.671 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.669 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.669 | |
| 3kjg | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.668 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.668 | |
| 1e0j | ANP | DNA primase/helicase | 2.7.7 | 0.666 | |
| 5dac | AGS | Uncharacterized protein | / | 0.666 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.665 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.664 | |
| 1w7i | ADP | Unconventional myosin-Va | / | 0.664 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.664 | |
| 3dm5 | GDP | Signal recognition particle 54 kDa protein | / | 0.664 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.664 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.664 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.663 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.662 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.662 | |
| 4lj9 | ACP | Chaperone protein ClpB | / | 0.662 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.662 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.662 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.660 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.660 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.659 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.659 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.659 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.659 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.659 | |
| 3r7w | GNP | GTP-binding protein GTR2 | / | 0.659 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.659 | |
| 4xvu | ATP | ATPase GET3 | / | 0.659 | |
| 2zsb | ADP | Pantothenate kinase | 2.7.1.33 | 0.657 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.655 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.655 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.655 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.655 | |
| 5ftf | ADP | TPR domain protein | / | 0.655 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.654 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.654 | |
| 4iei | ADP | Gene 2 protein | / | 0.654 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.653 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.653 | |
| 5cyp | GSP | Septin-9 | / | 0.653 | |
| 2q2y | ADP | Kinesin-like protein KIF11 | / | 0.652 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.652 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.652 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.651 |