sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3mjh | GTP | Ras-related protein Rab-5A |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.278 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.197 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.192 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.173 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.170 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.151 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.142 | |
| 4dso | GSP | GTPase KRas | / | 1.126 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.124 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.121 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.121 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.119 | |
| 4dlx | GNP | GTPase HRas | / | 1.117 | |
| 4dlz | GNP | GTPase HRas | / | 1.117 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.105 | |
| 2rgc | GNP | GTPase HRas | / | 1.102 | |
| 4g0n | GNP | GTPase HRas | / | 1.102 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.093 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 1.091 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.091 | |
| 2c5l | GTP | GTPase HRas | / | 1.089 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.089 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.088 | |
| 3i3s | GNP | GTPase HRas | / | 1.086 | |
| 3rs0 | GNP | GTPase HRas | / | 1.085 | |
| 3rs5 | GNP | GTPase HRas | / | 1.085 | |
| 4dlv | GNP | GTPase HRas | / | 1.085 | |
| 3oiw | GNP | GTPase HRas | / | 1.084 | |
| 3rsl | GNP | GTPase HRas | / | 1.084 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.078 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.075 | |
| 3lbh | GNP | GTPase HRas | / | 1.074 | |
| 3oiv | GNP | GTPase HRas | / | 1.073 | |
| 2rge | GNP | GTPase HRas | / | 1.072 | |
| 3ddc | GNP | GTPase HRas | / | 1.072 | |
| 3k8y | GNP | GTPase HRas | / | 1.071 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.070 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 1.070 | |
| 3rs4 | GNP | GTPase HRas | / | 1.070 | |
| 3rs7 | GNP | GTPase HRas | / | 1.070 | |
| 4dlt | GNP | GTPase HRas | / | 1.070 | |
| 4dls | GNP | GTPase HRas | / | 1.069 | |
| 5b2z | GNP | GTPase HRas | / | 1.069 | |
| 3lbi | GNP | GTPase HRas | / | 1.068 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 1.060 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.059 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 1.058 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.058 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.057 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.057 | |
| 4l9w | GNP | GTPase HRas | / | 1.054 | |
| 3lbn | GNP | GTPase HRas | / | 1.053 | |
| 3oiu | GNP | GTPase HRas | / | 1.053 | |
| 4nyj | GNP | GTPase HRas | / | 1.053 | |
| 3v4f | GNP | GTPase HRas | / | 1.052 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 1.051 | |
| 4xvq | GNP | GTPase HRas | / | 1.051 | |
| 4dlw | GNP | GTPase HRas | / | 1.050 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 1.049 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.049 | |
| 4k81 | GTP | GTPase HRas | / | 1.048 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 1.047 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.044 | |
| 3k9l | GNP | GTPase HRas | / | 1.043 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 1.039 | |
| 3l8y | GNP | GTPase HRas | / | 1.039 | |
| 4dsn | GCP | GTPase KRas | / | 1.036 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 1.036 | |
| 2rgb | GNP | GTPase HRas | / | 1.035 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.035 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.034 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.032 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 1.030 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 1.030 | |
| 4dvg | GSP | Rho family GTPase | / | 1.029 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 1.026 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.024 | |
| 2rgg | GNP | GTPase HRas | / | 1.022 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 1.022 | |
| 4nyi | GNP | GTPase HRas | / | 1.021 | |
| 3tgp | GNP | GTPase HRas | / | 1.020 | |
| 4dsu | GDP | GTPase KRas | / | 1.020 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.019 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 1.017 | |
| 4wa7 | GDP | GTPase KRas | / | 1.016 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 1.008 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.007 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 1.006 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 1.005 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 1.003 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 1.003 | |
| 4xsg | GSP | Transforming protein RhoA | / | 1.000 | |
| 4lv6 | GDP | GTPase KRas | / | 0.997 | |
| 4tq9 | GDP | GTPase KRas | / | 0.997 | |
| 3kud | GDP | GTPase HRas | / | 0.994 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.993 | |
| 4epx | GDP | GTPase KRas | / | 0.992 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.992 | |
| 4mit | GTP | Rho-related protein racC | / | 0.991 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.990 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.988 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.987 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.987 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.986 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.986 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.986 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.985 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.985 | |
| 4q02 | GDP | GTPase KRas | / | 0.983 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.982 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.982 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.980 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.979 | |
| 2ce2 | GDP | GTPase HRas | / | 0.977 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.976 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.976 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.975 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.974 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.970 | |
| 2cl6 | CAG | GTPase HRas | / | 0.968 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.967 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.966 | |
| 4q03 | GDP | GTPase KRas | / | 0.964 | |
| 4l9s | GDP | GTPase HRas | / | 0.962 | |
| 4epw | GDP | GTPase KRas | / | 0.960 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.960 | |
| 4ql3 | GDP | GTPase KRas | / | 0.960 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.960 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.957 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.951 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.950 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.949 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.946 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.946 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.946 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.946 | |
| 4lrw | GDP | GTPase KRas | / | 0.944 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.943 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.941 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.941 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.941 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.939 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.939 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.938 | |
| 3ref | GDP | Rho family GTPase | / | 0.938 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.936 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.936 | |
| 1lfd | GNP | GTPase HRas | / | 0.934 | |
| 4lpk | GDP | GTPase KRas | / | 0.932 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.929 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.929 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.928 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.927 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.926 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.925 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.925 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.923 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.919 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.919 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.918 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.915 | |
| 4l8g | GDP | GTPase KRas | / | 0.914 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.912 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.910 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.907 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.907 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.903 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.903 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.900 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.899 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.898 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.897 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.897 | |
| 4obe | GDP | GTPase KRas | / | 0.895 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.893 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.885 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.884 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.879 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.878 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.875 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.874 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.872 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.872 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.872 | |
| 4ldj | GDP | GTPase KRas | / | 0.871 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.863 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.863 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.861 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.854 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.852 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.851 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.851 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.850 | |
| 4luc | GDP | GTPase KRas | / | 0.849 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.848 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.848 | |
| 3ftq | GNP | Septin-2 | / | 0.847 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.844 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.843 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.842 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.840 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.840 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.839 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.838 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.833 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.832 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.832 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.831 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.831 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.831 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.831 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.831 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.830 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.830 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.830 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.828 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.826 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.826 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.825 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.825 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.825 | |
| 2fna | ADP | Uncharacterized protein | / | 0.825 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.821 | |
| 4xvr | GNP | GTPase HRas | / | 0.820 | |
| 2rgx | AP5 | Adenylate kinase | / | 0.819 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.819 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.819 | |
| 3r9x | GNP | GTPase Era | / | 0.818 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.817 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.816 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.816 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.816 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.814 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.812 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.809 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.809 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.809 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.808 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.808 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.807 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.807 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.804 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.804 | |
| 4yqf | GDP | Septin-9 | / | 0.804 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.803 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.803 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.802 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.802 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.802 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.801 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.801 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.801 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.800 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.798 | |
| 5cyo | GDP | Septin-9 | / | 0.798 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.797 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.793 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.793 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.792 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.792 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.792 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.792 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.792 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.791 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.791 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.790 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.790 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.789 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.788 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.788 | |
| 4v02 | ATP | Site-determining protein | / | 0.788 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.787 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.785 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.784 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.784 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.783 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.783 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.782 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.778 | |
| 2zts | ADP | Uncharacterized protein | / | 0.778 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.778 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.776 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.776 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.776 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.776 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.776 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.776 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.776 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.775 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.774 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.774 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.774 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.773 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.771 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.771 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.771 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.771 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.770 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.770 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.769 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.768 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.768 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.768 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.768 | |
| 5bn3 | ADP | NEQ263 | / | 0.768 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.767 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.765 | |
| 1ank | ANP | Adenylate kinase | / | 0.764 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.764 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.762 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.761 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.761 | |
| 4xvu | ATP | ATPase GET3 | / | 0.761 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.760 | |
| 1xmv | ADP | Protein RecA | / | 0.760 | |
| 4db1 | ANP | Myosin-7 | / | 0.760 | |
| 1e4y | AP5 | Adenylate kinase | / | 0.759 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.759 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.758 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.758 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.758 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.757 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.757 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.756 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.756 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.756 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.754 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.753 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.753 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.751 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.751 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.750 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.749 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.749 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.749 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.749 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.748 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.748 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.748 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.747 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.747 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.745 | |
| 2eck | ADP | Adenylate kinase | / | 0.745 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.745 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.745 | |
| 1nly | AGS | Cag alpha | / | 0.744 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.743 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.742 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.742 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.740 | |
| 1xms | ANP | Protein RecA | / | 0.739 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.739 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.738 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.737 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.736 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.736 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.736 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.736 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.736 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.735 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.735 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.735 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.735 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.735 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.734 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.734 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.734 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.734 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.733 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.733 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.732 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.732 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.732 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.732 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.732 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.732 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.732 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.732 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.730 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.729 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.729 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.729 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.729 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.727 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.727 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.726 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.726 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.726 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.726 | |
| 4jky | ADP | Adenylate kinase | / | 0.725 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.723 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.723 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.723 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.723 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.723 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.722 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.721 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.720 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.720 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.719 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.719 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.718 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.716 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.716 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.714 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.712 | |
| 3l1c | ADP | Protein claret segregational | / | 0.712 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.712 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.712 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.710 | |
| 4nu0 | AP5 | Adenylate kinase | / | 0.710 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.709 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.709 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.709 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.709 | |
| 4zca | ADP | Kinesin-like protein KIF11 | / | 0.709 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.708 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.707 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.707 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.706 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.706 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.706 | |
| 3nbx | ADP | ATPase RavA | 3.6.3 | 0.706 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.705 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.705 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.704 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.703 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.702 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.702 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.702 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.701 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.701 | |
| 4ma4 | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.700 | |
| 2zrj | AGS | Protein RecA | / | 0.699 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.699 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.699 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.695 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.694 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.693 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.693 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.692 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.692 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.691 | |
| 1mab | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.690 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.690 | |
| 4cdg | ADP | Bloom syndrome protein | 3.6.4.12 | 0.688 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.687 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.687 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 2zro | ADP | Protein RecA | / | 0.686 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.686 | |
| 2osb | AP5 | Adenylate kinase | / | 0.685 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.685 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.684 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.684 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.684 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.682 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.681 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.681 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.681 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.681 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.681 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.679 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.678 | |
| 2c98 | ADP | Psp operon transcriptional activator | / | 0.678 | |
| 2i1v | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.677 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.677 | |
| 4h1v | GNP | Dynamin-1-like protein | 3.6.5.5 | 0.677 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.676 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.676 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.676 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.675 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.675 | |
| 4jlo | ADP | Adenylate kinase | / | 0.674 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.672 | |
| 2d4h | 5GP | Guanylate-binding protein 1 | / | 0.672 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.671 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.671 | |
| 4gyi | ADP | Uncharacterized protein | / | 0.671 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.670 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.670 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.669 | |
| 1sxj | ADP | Replication factor C subunit 5 | / | 0.668 | |
| 3r7w | GNP | GTP-binding protein GTR2 | / | 0.668 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.667 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.667 | |
| 4rz3 | ADP | Site-determining protein | / | 0.666 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.665 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.664 | |
| 5cyp | GSP | Septin-9 | / | 0.664 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.663 | |
| 5dac | AGS | Uncharacterized protein | / | 0.663 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.662 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.662 | |
| 2d7d | ADP | UvrABC system protein B | / | 0.660 | |
| 4qbg | AP5 | Adenylate kinase | / | 0.655 | |
| 2qaj | AP5 | Adenylate kinase | / | 0.654 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.654 | |
| 5fv0 | ONA | ESX secretion system protein EccC | / | 0.652 | |
| 1dj3 | GDP | Adenylosuccinate synthetase, chloroplastic | / | 0.651 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.651 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.651 | |
| 2ad5 | ADP | CTP synthase | / | 0.651 | |
| 2iuu | ADP | DNA translocase FtsK | / | 0.651 | |
| 3ieu | GDP | GTPase Era | / | 0.651 | |
| 3kjg | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.651 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.650 | |
| 4lj9 | ACP | Chaperone protein ClpB | / | 0.650 |