Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3bbd | SAH | Ribosomal RNA small subunit methyltransferase Nep1 | 2.1.1 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3bbd | SAH | Ribosomal RNA small subunit methyltransferase Nep1 | 2.1.1 | 1.000 | |
| 3bbh | SFG | Ribosomal RNA small subunit methyltransferase Nep1 | 2.1.1 | 0.577 | |
| 1h5q | NAP | NADP-dependent mannitol dehydrogenase | 1.1.1.138 | 0.507 | |
| 3o7b | SAH | Ribosomal RNA small subunit methyltransferase Nep1 | / | 0.506 | |
| 1uam | SAH | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | 0.505 | |
| 3n4k | SAH | tRNA (cytidine(34)-2'-O)-methyltransferase | / | 0.505 | |
| 4pzk | SAH | Putative tRNA (cytidine(34)-2'-O)-methyltransferase | / | 0.493 | |
| 4z4p | SAH | Histone-lysine N-methyltransferase 2D | 2.1.1.43 | 0.492 | |
| 1p9p | SAH | tRNA (guanine-N(1)-)-methyltransferase | / | 0.491 | |
| 3ndc | SAH | Precorrin-4 C(11)-methyltransferase | 2.1.1.133 | 0.491 | |
| 5fwn | NAP | Putative dehydrogenase | / | 0.486 | |
| 4nd3 | NAD | Lactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase | / | 0.484 | |
| 4tqg | NDP | Putative dTDP-d-glucose 4 6-dehydratase | / | 0.484 | |
| 3f03 | FMN | Pentaerythritol tetranitrate reductase | / | 0.482 | |
| 1ual | SAH | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | 0.481 | |
| 4k28 | NAD | Shikimate dehydrogenase family protein | / | 0.481 | |
| 3h3t | 16H | Collagen type IV alpha-3-binding protein | / | 0.480 | |
| 1bws | NDP | GDP-L-fucose synthase | / | 0.479 | |
| 4nbt | NAD | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 0.479 | |
| 4cnf | MTA | SpoU rRNA methylase | / | 0.478 | |
| 1a72 | PAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.477 | |
| 1xe5 | 5FE | Plasmepsin-2 | 3.4.23.39 | 0.477 | |
| 3lqs | PSZ | D-alanine aminotransferase | 2.6.1.21 | 0.476 | |
| 3p74 | FMN | Pentaerythritol tetranitrate reductase | / | 0.475 | |
| 3p62 | FMN | Pentaerythritol tetranitrate reductase | / | 0.474 | |
| 1n83 | CLR | Nuclear receptor ROR-alpha | / | 0.473 | |
| 1w6h | TIT | Plasmepsin-2 | 3.4.23.39 | 0.472 | |
| 1xe6 | 5FP | Plasmepsin-2 | 3.4.23.39 | 0.472 | |
| 2hs8 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.472 | |
| 3oij | SAH | Ribosomal RNA small subunit methyltransferase NEP1 | / | 0.472 | |
| 4fak | SAM | Ribosomal RNA large subunit methyltransferase H | / | 0.472 | |
| 4kgn | SAH | tRNA (cytidine(34)-2'-O)-methyltransferase | / | 0.472 | |
| 4m49 | 22Y | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.472 | |
| 5ein | NAP | [LysW]-L-2-aminoadipate 6-phosphate reductase | / | 0.472 | |
| 3gvh | NAD | Malate dehydrogenase | / | 0.471 | |
| 1g1a | NAD | dTDP-glucose 4,6-dehydratase | / | 0.470 | |
| 1qbq | HFP | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha | / | 0.470 | |
| 1qbq | HFP | Protein farnesyltransferase subunit beta | 2.5.1.58 | 0.470 | |
| 2a5k | AZP | Replicase polyprotein 1ab | 3.4.22 | 0.470 | |
| 2a7r | 5GP | GMP reductase 2 | / | 0.470 | |
| 4ke1 | 1R6 | Beta-secretase 1 | 3.4.23.46 | 0.470 | |
| 1zxm | ANP | DNA topoisomerase 2-alpha | 5.99.1.3 | 0.469 | |
| 2fj1 | CTC | Tetracycline repressor protein class D | / | 0.469 | |
| 3ohh | 3HH | Beta-secretase 1 | 3.4.23.46 | 0.469 | |
| 3qt6 | 2P0 | Mevalonate diphosphate decarboxylase | / | 0.469 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.468 | |
| 4f32 | N32 | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | / | 0.468 | |
| 2hfu | MEV | Mevalonate kinase | / | 0.467 | |
| 2iyf | ERY | Oleandomycin glycosyltransferase | 2.4.1 | 0.467 | |
| 3doc | NAD | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.467 | |
| 3nk7 | SAM | 23S rRNA (adenosine(1067)-2'-O)-methyltransferase | / | 0.467 | |
| 3r9u | FAD | Thioredoxin reductase | / | 0.467 | |
| 3toz | NAD | Shikimate dehydrogenase (NADP(+)) | / | 0.467 | |
| 2yy8 | SAM | tRNA (cytidine(56)-2'-O)-methyltransferase | / | 0.466 | |
| 4x3l | MTA | RNA 2'-O ribose methyltransferase | / | 0.466 | |
| 1h63 | FMN | Pentaerythritol tetranitrate reductase | / | 0.465 | |
| 1p0p | BCH | Cholinesterase | 3.1.1.8 | 0.465 | |
| 3hgo | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.465 | |
| 3zw9 | NAD | Peroxisomal bifunctional enzyme | 1.1.1.35 | 0.465 | |
| 4qai | FMN | NADPH dehydrogenase | / | 0.465 | |
| 5b0o | ADP | Flagellum-specific ATP synthase | 3.6.3.14 | 0.465 | |
| 1o76 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.464 | |
| 2g1n | 1IG | Renin | 3.4.23.15 | 0.464 | |
| 2zvb | SAH | Precorrin-3 C17-methyltransferase | / | 0.464 | |
| 4bfz | ZVZ | Pantothenate kinase | 2.7.1.33 | 0.464 | |
| 4mcd | 22L | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | 0.464 | |
| 4yvg | SAM | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | 0.464 | |
| 1icq | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.463 | |
| 2a1o | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.463 | |
| 2xfi | XFI | Beta-secretase 1 | 3.4.23.46 | 0.463 | |
| 2yy8 | MTA | tRNA (cytidine(56)-2'-O)-methyltransferase | / | 0.463 | |
| 1bwl | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.462 | |
| 1uak | SAM | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | 0.462 | |
| 2i7n | ACO | Pantothenate kinase 1 | 2.7.1.33 | 0.462 | |
| 3h3r | 14H | Collagen type IV alpha-3-binding protein | / | 0.462 | |
| 4dpt | AGS | Mevalonate diphosphate decarboxylase | / | 0.462 | |
| 4yvh | SFG | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | 0.462 | |
| 5a9s | NAP | Putative dehydrogenase | / | 0.462 | |
| 1nzd | UPG | DNA beta-glucosyltransferase | / | 0.461 | |
| 2gjl | FMN | Nitronate monooxygenase | 1.13.12.16 | 0.461 | |
| 2gz7 | D3F | Orf1a polyprotein | / | 0.461 | |
| 2qn7 | HBZ | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.461 | |
| 4dpf | 0LG | Beta-secretase 1 | 3.4.23.46 | 0.461 | |
| 4h4y | NAP | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.461 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.461 | |
| 1g6k | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.460 | |
| 1u2y | GOX | Pancreatic alpha-amylase | / | 0.460 | |
| 1u3d | FAD | Cryptochrome-1 | / | 0.460 | |
| 2e8h | SAH | Diphthine synthase | / | 0.460 | |
| 2he5 | NDP | Aldo-keto reductase family 1 member C21 | 1.1.1 | 0.460 | |
| 2yj4 | ATP | Copper-transporting ATPase | / | 0.460 | |
| 3kjm | 245 | Cytokinin dehydrogenase 1 | 1.5.99.12 | 0.460 | |
| 3vye | VYE | Renin | 3.4.23.15 | 0.460 | |
| 4eu9 | COA | Succinyl-CoA:acetate CoA-transferase | / | 0.460 | |
| 4ig6 | SAH | tRNA (guanine-N(1)-)-methyltransferase | / | 0.460 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.460 | |
| 1beu | IPL | Tryptophan synthase alpha chain | / | 0.459 | |
| 1ra3 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.459 | |
| 2fr0 | NDP | 6-deoxyerythronolide-B synthase EryA1, modules 1 and 2 | / | 0.459 | |
| 2v16 | C47 | Renin | 3.4.23.15 | 0.459 | |
| 3p82 | FMN | Pentaerythritol tetranitrate reductase | / | 0.459 | |
| 3pft | FMN | Flavin reductase | / | 0.459 | |
| 4df2 | FMN | NADPH dehydrogenase | / | 0.459 | |
| 4djh | JDC | Kappa-type opioid receptor | / | 0.459 | |
| 1bvr | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.458 | |
| 1icp | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.458 | |
| 2ym1 | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.458 | |
| 2ztv | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.458 | |
| 3c1k | T15 | Prothrombin | 3.4.21.5 | 0.458 | |
| 3f1k | NAP | Uncharacterized oxidoreductase YciK | 1 | 0.458 | |
| 3isj | A8D | Pantothenate synthetase | 6.3.2.1 | 0.458 | |
| 4m83 | ERY | Oleandomycin glycosyltransferase | 2.4.1 | 0.458 | |
| 1h50 | FMN | Pentaerythritol tetranitrate reductase | / | 0.457 | |
| 1i7p | FAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.457 | |
| 1w51 | L01 | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
| 2fn7 | NAD | Lactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase | / | 0.457 | |
| 2zsb | ADP | Pantothenate kinase | 2.7.1.33 | 0.457 | |
| 3lpj | Z75 | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
| 4jwf | SAH | tRNA (guanine(9)-N1)-methyltransferase | / | 0.457 | |
| 4rlh | 0WE | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.457 | |
| 1e7q | NAP | GDP-L-fucose synthase | / | 0.456 | |
| 1zgi | 382 | Prothrombin | 3.4.21.5 | 0.456 | |
| 2af3 | COA | Phosphate acetyltransferase | 2.3.1.8 | 0.456 | |
| 2dv7 | SAH | Diphthine synthase | / | 0.456 | |
| 3hgs | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.456 | |
| 3lqf | NAD | Galactitol dehydrogenase | / | 0.456 | |
| 3mpi | FAD | Glutaryl-CoA dehydrogenase | 1.3.99.32 | 0.456 | |
| 4du8 | 2P0 | Mevalonate diphosphate decarboxylase | / | 0.456 | |
| 4eu4 | COA | Succinyl-CoA:acetate CoA-transferase | / | 0.456 | |
| 4k6f | NAP | Putative Acetoacetyl-CoA reductase | / | 0.456 | |
| 1rne | C60 | Renin | 3.4.23.15 | 0.455 | |
| 2abb | FMN | Pentaerythritol tetranitrate reductase | / | 0.455 | |
| 2aq8 | NAI | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.455 | |
| 2d1y | NAD | Oxidoreductase, short-chain dehydrogenase/reductase family | / | 0.455 | |
| 3oii | SAH | Ribosomal RNA small subunit methyltransferase NEP1 | / | 0.455 | |
| 4jnk | NAI | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.455 | |
| 4kby | C2E | Stimulator of interferon genes protein | / | 0.455 | |
| 1fwk | ADP | Homoserine kinase | 2.7.1.39 | 0.454 | |
| 1h51 | FMN | Pentaerythritol tetranitrate reductase | / | 0.454 | |
| 1j49 | NAD | D-lactate dehydrogenase | 1.1.1.28 | 0.454 | |
| 1lkd | BP6 | Biphenyl-2,3-diol 1,2-dioxygenase | 1.13.11.39 | 0.454 | |
| 1q45 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.454 | |
| 1y7l | ASN_LEU_ASN_ILE | Cysteine synthase | 2.5.1.47 | 0.454 | |
| 2ggs | NDP | dTDP-4-dehydrorhamnose reductase | / | 0.454 | |
| 4epl | JAI | Jasmonic acid-amido synthetase JAR1 | 6.3.2 | 0.454 | |
| 4gz6 | 12V | UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit | / | 0.454 | |
| 4u3j | GTP | Tubulin beta chain | / | 0.454 | |
| 1lrj | UD1 | UDP-glucose 4-epimerase | 5.1.3.2 | 0.453 | |
| 1npd | NAD | Quinate/shikimate dehydrogenase | / | 0.453 | |
| 1qlh | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.453 | |
| 1vyr | FMN | Pentaerythritol tetranitrate reductase | / | 0.453 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.453 | |
| 2cx8 | SAH | Ribosomal RNA small subunit methyltransferase E | / | 0.453 | |
| 2ojt | UBA | Glutamate receptor ionotropic, kainate 1 | / | 0.453 | |
| 2pzj | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.453 | |
| 2q1u | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.453 | |
| 2qbm | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.453 | |
| 2vpr | TDC | Tetracycline repressor protein class H | / | 0.453 | |
| 2z0y | SAM | Ribosomal RNA small subunit methyltransferase E | / | 0.453 | |
| 2z4s | ADP | Chromosomal replication initiator protein DnaA | / | 0.453 | |
| 3gvi | ADP | Malate dehydrogenase | / | 0.453 | |
| 4h3y | SAH | tRNA (guanine-N(1)-)-methyltransferase | / | 0.453 | |
| 4ipw | 1G7 | Mycocyclosin synthase | 1.14.21.9 | 0.453 | |
| 4lrz | ADP | PEP-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL | 2.7 | 0.453 | |
| 5a1t | NAI | L-lactate dehydrogenase | / | 0.453 | |
| 1hdg | NAD | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.452 | |
| 1il0 | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.452 | |
| 2xfs | J01 | Uncharacterized protein | / | 0.452 | |
| 3lsi | FAD | Pyranose 2-oxidase | / | 0.452 | |
| 3own | 3OW | Renin | 3.4.23.15 | 0.452 | |
| 3s87 | ADP | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.452 | |
| 4dpu | AGS | Mevalonate diphosphate decarboxylase | / | 0.452 | |
| 4eag | ATP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.452 | |
| 4lol | 1YE | Stimulator of interferon genes protein | / | 0.452 | |
| 4xcv | NDP | Probable hydroxyacid dehydrogenase protein | / | 0.452 | |
| 5eio | NAP | [LysW]-L-2-aminoadipate 6-phosphate reductase | / | 0.452 | |
| 1cnf | FAD | Nitrate reductase [NADH] | 1.7.1.1 | 0.451 | |
| 1o9b | NAI | Quinate/shikimate dehydrogenase | / | 0.451 | |
| 2ejv | NAD | L-threonine 3-dehydrogenase | / | 0.451 | |
| 2hut | SAH | Diphthine synthase | / | 0.451 | |
| 2ph6 | 712 | Beta-secretase 1 | 3.4.23.46 | 0.451 | |
| 3dyq | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.451 | |
| 3h3s | H15 | Collagen type IV alpha-3-binding protein | / | 0.451 | |
| 3m1v | COM | Methyl-coenzyme M reductase I subunit alpha | 2.8.4.1 | 0.451 | |
| 3m1v | COM | Methyl-coenzyme M reductase I subunit beta | 2.8.4.1 | 0.451 | |
| 3m2u | COM | Methyl-coenzyme M reductase I subunit alpha | 2.8.4.1 | 0.451 | |
| 4jc5 | 1K5 | Stimulator of interferon genes protein | / | 0.451 | |
| 4l4e | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.451 | |
| 4y35 | F90 | Endothiapepsin | 3.4.23.22 | 0.451 | |
| 4yvj | SFG | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | 0.451 | |
| 5adh | APR | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.451 | |
| 2aq7 | TL5 | 3-oxoacyl-[acyl-carrier-protein] synthase 1 | 2.3.1.41 | 0.450 | |
| 2hs6 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.450 | |
| 4gh6 | LUO | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.450 | |
| 4gv4 | MEJ | Poly [ADP-ribose] polymerase 3 | 2.4.2.30 | 0.450 | |
| 4h3j | 10W | Beta-secretase 1 | 3.4.23.46 | 0.450 | |
| 4kky | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.450 | |
| 4oqy | NDP | (S)-imine reductase | / | 0.450 | |
| 4rvd | SAM | D-mycarose 3-C-methyltransferase | / | 0.450 | |
| 5eso | TDP | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase | / | 0.450 | |
| 2b37 | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.449 | |
| 2bjf | DXC | Choloylglycine hydrolase | 3.5.1.24 | 0.449 | |
| 2dxx | SAH | Diphthine synthase | / | 0.449 | |
| 2fy4 | COA | Choline O-acetyltransferase | 2.3.1.6 | 0.449 | |
| 2hsd | NAD | 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase | 1.1.1.53 | 0.449 | |
| 2oeg | UPG | UDP-glucose pyrophosphorylase | / | 0.449 | |
| 3f63 | GTX | Glutathione transferase GST1-4 | / | 0.449 | |
| 3oqf | S51 | Renin | 3.4.23.15 | 0.449 | |
| 4bb3 | KKA | Isopenicillin N synthase | 1.21.3.1 | 0.449 | |
| 4hbm | 0Y7 | E3 ubiquitin-protein ligase Mdm2 | 6.3.2 | 0.449 | |
| 4kgk | GTP | Uncharacterized protein | / | 0.449 | |
| 1cbf | SAH | Cobalt-precorrin-4 C(11)-methyltransferase | 2.1.1.271 | 0.448 | |
| 1ep1 | FMN | Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit | 1.3.1.14 | 0.448 | |
| 1kbo | 340 | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.448 | |
| 1kfb | IGP | Tryptophan synthase alpha chain | / | 0.448 | |
| 1l4h | NCN | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 2.4.2.21 | 0.448 | |
| 1o6z | NAD | Malate dehydrogenase | / | 0.448 | |
| 1qx4 | FAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.448 | |
| 1rz0 | FAD | Phenol 2-hydroxylase component B | / | 0.448 | |
| 2a94 | AP0 | L-lactate dehydrogenase | 1.1.1.27 | 0.448 | |
| 2cf6 | NAP | Cinnamyl alcohol dehydrogenase 5 | 1.1.1.195 | 0.448 | |
| 2g8y | NAD | Hydroxycarboxylate dehydrogenase B | / | 0.448 | |
| 2hr8 | SAH | Diphthine synthase | / | 0.448 | |
| 3jun | AJD | Phenazine biosynthesis protein A/B | / | 0.448 | |
| 3lpi | Z74 | Beta-secretase 1 | 3.4.23.46 | 0.448 | |
| 4eo3 | FMN | Bacterioferritin comigratory protein/NADH dehydrogenase | / | 0.448 | |
| 4xbo | SAH | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | 2.1.1.200 | 0.448 | |
| 5a3c | NAD | SIR2 family protein | / | 0.448 | |
| 1iol | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.447 | |
| 1nzf | UPG | DNA beta-glucosyltransferase | / | 0.447 | |
| 2a1m | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.447 | |
| 2emr | SAH | Diphthine synthase | / | 0.447 | |
| 2gvd | FKP | Adenylate cyclase type 2 | / | 0.447 | |
| 2gvd | FKP | Adenylate cyclase type 5 | / | 0.447 | |
| 2r2m | I50 | Prothrombin | 3.4.21.5 | 0.447 | |
| 3atz | FMN | Prostaglandin F2a synthase | / | 0.447 | |
| 3cop | ADP | Glycogen synthase | 2.4.1.21 | 0.447 | |
| 3nut | SAH | Precorrin-3 methylase | / | 0.447 | |
| 3p67 | FMN | Pentaerythritol tetranitrate reductase | / | 0.447 | |
| 3phi | NDP | Shikimate dehydrogenase (NADP(+)) | / | 0.447 | |
| 3rpe | FAD | Putative modulator of drug activity | / | 0.447 | |
| 3te5 | NAI | 5'-AMP-activated protein kinase subunit gamma | / | 0.447 | |
| 1d0v | RBZ | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 2.4.2.21 | 0.446 | |
| 1ee9 | NAD | Methylenetetrahydrofolate dehydrogenase [NAD(+)] | 1.5.1.15 | 0.446 | |
| 1uxy | EPU | UDP-N-acetylenolpyruvoylglucosamine reductase | 1.3.1.98 | 0.446 | |
| 1ykd | CMP | Adenylate cyclase | / | 0.446 | |
| 2dsg | SAH | Diphthine synthase | / | 0.446 | |
| 2ev9 | NAP | Shikimate dehydrogenase (NADP(+)) | / | 0.446 | |
| 2hk9 | NAP | Shikimate dehydrogenase (NADP(+)) | / | 0.446 | |
| 2owg | SAH | Diphthine synthase | / | 0.446 | |
| 2wyv | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.446 | |
| 3fpj | SAM | Uncharacterized protein | / | 0.446 | |
| 3orf | NAD | Dihydropteridine reductase | 1.5.1.34 | 0.446 | |
| 3v2u | ATP | Protein GAL3 | / | 0.446 | |
| 3w1q | YRO | Dihydroorotate dehydrogenase (fumarate) | 1.3.98.1 | 0.446 | |
| 4i0b | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.446 | |
| 4nbw | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.446 | |
| 1f17 | NAI | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.445 | |
| 2a9y | 26A | Adenosine kinase | 2.7.1.20 | 0.445 | |
| 2el0 | SAH | Diphthine synthase | / | 0.445 | |
| 2il2 | LIX | Renin | 3.4.23.15 | 0.445 | |
| 3flk | NAI | Tartrate dehydrogenase/decarboxylase | 1.1.1.93 | 0.445 | |
| 4b4v | L34 | Bifunctional protein FolD | / | 0.445 | |
| 4cng | SAH | SpoU rRNA methylase | / | 0.445 | |
| 4fiz | CUE | 17beta-hydroxysteroid dehydrogenase | / | 0.445 | |
| 4i1i | NAD | Malate dehydrogenase | / | 0.445 | |
| 4jic | FMN | GTN Reductase | / | 0.445 | |
| 1c4v | IH2 | Prothrombin | 3.4.21.5 | 0.444 | |
| 1cne | FAD | Nitrate reductase [NADH] | 1.7.1.1 | 0.444 | |
| 1dyi | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.444 | |
| 1qy8 | RDI | Endoplasmin | / | 0.444 | |
| 1w34 | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.444 | |
| 1x1a | SAM | C-20 methyltransferase | / | 0.444 | |
| 3a3g | DLZ | Lumazine protein | / | 0.444 | |
| 3ag6 | PAJ | Pantothenate synthetase | / | 0.444 | |
| 3cid | 318 | Beta-secretase 1 | 3.4.23.46 | 0.444 | |
| 3ixk | 929 | Beta-secretase 1 | 3.4.23.46 | 0.444 | |
| 3l3m | A92 | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.444 | |
| 3otb | DGT | Probable tRNA(His) guanylyltransferase | 2.7.7.79 | 0.444 | |
| 4b79 | NAD | Probable short-chain dehydrogenase | / | 0.444 | |
| 4dre | NAI | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.444 | |
| 4lcj | NAD | C-terminal-binding protein 2 | / | 0.444 | |
| 4q71 | FAD | Bifunctional protein PutA | / | 0.444 | |
| 5c1d | 12V | UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit | / | 0.444 | |
| 1ay0 | TPP | Transketolase 1 | 2.2.1.1 | 0.443 | |
| 1c6x | 3IN | Protease | / | 0.443 | |
| 1cf3 | FAD | Glucose oxidase | 1.1.3.4 | 0.443 | |
| 1f20 | FAD | Nitric oxide synthase, brain | 1.14.13.39 | 0.443 | |
| 1qvu | PRL | HTH-type transcriptional regulator QacR | / | 0.443 | |
| 2ed3 | SAH | Diphthine synthase | / | 0.443 | |
| 2emu | SAH | Diphthine synthase | / | 0.443 | |
| 2o1s | TDP | 1-deoxy-D-xylulose-5-phosphate synthase | 2.2.1.7 | 0.443 | |
| 2q1s | NAI | Putative nucleotide sugar epimerase/ dehydratase | / | 0.443 | |
| 3od0 | PCG | cGMP-dependent protein kinase 1 | 2.7.11.12 | 0.443 | |
| 3qls | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.443 | |
| 3veu | 0GO | Beta-secretase 1 | 3.4.23.46 | 0.443 | |
| 4ddh | MS0 | Pantothenate synthetase | 6.3.2.1 | 0.443 | |
| 4fuj | 1U9 | Urokinase-type plasminogen activator | 3.4.21.73 | 0.443 | |
| 4wqm | FAD | Toluene-4-monooxygenase electron transfer component | 1.18.1.3 | 0.443 | |
| 5bsg | NAP | Pyrroline-5-carboxylate reductase | / | 0.443 | |
| 1h73 | ANP | Homoserine kinase | 2.7.1.39 | 0.442 | |
| 1h74 | ADP | Homoserine kinase | 2.7.1.39 | 0.442 | |
| 1kh3 | ANP | Argininosuccinate synthase | / | 0.442 | |
| 1pjc | NAD | Alanine dehydrogenase | / | 0.442 | |
| 1tqf | 32P | Beta-secretase 1 | 3.4.23.46 | 0.442 | |
| 1u71 | MXA | Dihydrofolate reductase | 1.5.1.3 | 0.442 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.442 | |
| 2gcg | NDP | Glyoxylate reductase/hydroxypyruvate reductase | 1.1.1.79 | 0.442 | |
| 2pk3 | A2R | GDP-6-deoxy-D-mannose reductase | / | 0.442 | |
| 2q46 | NAP | Uncharacterized protein At5g02240 | / | 0.442 | |
| 2z7h | GG3 | Geranylgeranyl pyrophosphate synthase | / | 0.442 | |
| 3gjw | GJW | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.442 | |
| 3gka | FMN | N-ethylmaleimide reductase | / | 0.442 | |
| 3h86 | AP5 | Adenylate kinase | / | 0.442 | |
| 3k3e | PDB | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.442 | |
| 3pl8 | FAD | Pyranose 2-oxidase | / | 0.442 | |
| 3w5h | FAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.442 | |
| 3wsw | NAD | L-lactate dehydrogenase | / | 0.442 | |
| 4b1r | ITC | Tetracycline repressor protein class D | / | 0.442 | |
| 4dpi | 0N1 | Beta-secretase 1 | 3.4.23.46 | 0.442 | |
| 4hwk | NAP | Sepiapterin reductase | 1.1.1.153 | 0.442 | |
| 4i0h | 1BL | Beta-secretase 1 | 3.4.23.46 | 0.442 | |
| 4jwj | SAH | tRNA (guanine(9)-N1)-methyltransferase | / | 0.442 | |
| 4x30 | T44 | Thyroxine-binding globulin | / | 0.442 | |
| 1wng | SAH | Diphthine synthase | / | 0.441 | |
| 2dv3 | SAH | Diphthine synthase | / | 0.441 | |
| 2ed4 | FAD | 4-hydroxyphenylacetate 3-monooxygenase reductase component | 1.5.1.36 | 0.441 | |
| 2fzn | FAD | Bifunctional protein PutA | 1.5.5.2 | 0.441 | |
| 2g1y | 5IG | Renin | 3.4.23.15 | 0.441 | |
| 2gv8 | NDP | Thiol-specific monooxygenase | 1.14.13 | 0.441 | |
| 2z6j | TUI | 2-nitropropane dioxygenase | / | 0.441 | |
| 2zvc | SAH | Precorrin-3 C17-methyltransferase | / | 0.441 | |
| 3axk | NDP | Ribulose bisphosphate carboxylase large chain | 4.1.1.39 | 0.441 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.441 | |
| 3tb9 | CDP | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.441 | |
| 4fmx | CNL | 1,8-cineole 2-endo-monooxygenase | 1.14.13.156 | 0.441 | |
| 4m5p | FMN | NADPH dehydrogenase | / | 0.441 | |
| 4mrm | 2BY | Gamma-aminobutyric acid type B receptor subunit 1 | / | 0.441 | |
| 4p9d | TMP | Deoxycytidylate deaminase | / | 0.441 | |
| 4x5h | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 5a4k | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.441 | |
| 1a8p | FAD | Ferredoxin--NADP reductase | / | 0.440 | |
| 1k08 | BZD | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.440 | |
| 1kbq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.440 | |
| 1kp2 | ATP | Argininosuccinate synthase | 6.3.4.5 | 0.440 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.440 | |
| 1vi2 | NAD | Quinate/shikimate dehydrogenase | / | 0.440 | |
| 1x27 | ASP_ASP_TYR_VAL_PTR | Tyrosine-protein kinase Lck | 2.7.10.2 | 0.440 | |
| 2idz | ZID | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.440 | |
| 2ien | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.440 | |
| 3d4p | NAD | L-lactate dehydrogenase 1 | 1.1.1.27 | 0.440 | |
| 3gqv | NAP | Enoyl reductase LovC | 1 | 0.440 | |
| 3iqh | TYR_ASP_ILE | Cysteine synthase | 2.5.1.47 | 0.440 | |
| 3k5c | 0BI | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 3lsm | SFD | Pyranose 2-oxidase | / | 0.440 | |
| 3t3q | 9PL | Cytochrome P450 2A6 | 1.14.13 | 0.440 | |
| 4brd | ANP | Ectonucleoside triphosphate diphosphohydrolase I | / | 0.440 | |
| 4ewo | 996 | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 5cyo | GDP | Septin-9 | / | 0.440 |