2.500 Å
X-ray
2009-12-17
Min | Mean | Median | Standard Deviation | Max | Count | |
---|---|---|---|---|---|---|
pChEMBL: | 8.220 | 8.220 | 8.220 | 0.000 | 8.220 | 1 |
Name: | Poly [ADP-ribose] polymerase 1 |
---|---|
ID: | PARP1_HUMAN |
AC: | P09874 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.4.2.30 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 27.796 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.769 | 867.375 |
% Hydrophobic | % Polar |
---|---|
40.08 | 59.92 |
According to VolSite |
HET Code: | A92 |
---|---|
Formula: | C19H20FN4O |
Molecular weight: | 339.387 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 66.22 % |
Polar Surface area: | 88.38 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 3 |
Rings: | 4 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
26.3651 | 11.222 | 27.0235 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C16 | CB | ALA- 101 | 3.83 | 0 | Hydrophobic |
C16 | CB | GLU- 102 | 4.09 | 0 | Hydrophobic |
N22 | OD2 | ASP- 105 | 3.24 | 0 | Ionic (Ligand Cationic) |
N23 | O | GLY- 202 | 2.91 | 157.36 | H-Bond (Ligand Donor) |
O24 | N | GLY- 202 | 2.74 | 166.99 | H-Bond (Protein Donor) |
F | CD2 | TYR- 228 | 4.24 | 0 | Hydrophobic |
F | CZ | TYR- 235 | 3.42 | 0 | Hydrophobic |
C11 | CB | TYR- 235 | 3.41 | 0 | Hydrophobic |
C1 | CB | ALA- 237 | 4.05 | 0 | Hydrophobic |
C1 | CG | LYS- 242 | 3.77 | 0 | Hydrophobic |
O24 | OG | SER- 243 | 3.18 | 156.84 | H-Bond (Protein Donor) |
C5 | CB | GLU- 327 | 4.11 | 0 | Hydrophobic |