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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3l3m A92 Poly [ADP-ribose] polymerase 1 2.4.2.30

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3l3m A92Poly [ADP-ribose] polymerase 1 2.4.2.30 0.897
4tjy 3GNTankyrase-2 2.4.2.30 0.731
3gn7 3GNPoly [ADP-ribose] polymerase 1 2.4.2.30 0.727
1efy BZCPoly [ADP-ribose] polymerase 1 2.4.2.30 0.717
4avw G18Tankyrase-2 2.4.2.30 0.710
2rcw AAIPoly [ADP-ribose] polymerase 1 2.4.2.30 0.708
4gv2 5MEPoly [ADP-ribose] polymerase 3 2.4.2.30 0.708
4gv7 MEWPoly [ADP-ribose] polymerase 1 2.4.2.30 0.708
4avu LDRTankyrase-2 2.4.2.30 0.705
4pnr G18Tankyrase-2 2.4.2.30 0.704
5ds3 09LPoly [ADP-ribose] polymerase 1 2.4.2.30 0.701
1pax DHQPoly [ADP-ribose] polymerase 1 2.4.2.30 0.700
2rd6 78PPoly [ADP-ribose] polymerase 1 2.4.2.30 0.700
4gv4 MEJPoly [ADP-ribose] polymerase 3 2.4.2.30 0.699
4pnm NU1Tankyrase-2 2.4.2.30 0.698
4r5w XAVPoly [ADP-ribose] polymerase 1 2.4.2.30 0.698
4hhz 15SPoly [ADP-ribose] polymerase 1 2.4.2.30 0.697
3l3l L3LPoly [ADP-ribose] polymerase 1 2.4.2.30 0.696
4f1q 0RZPoly [ADP-ribose] polymerase 14 2.4.2.30 0.687
4gv0 8MEPoly [ADP-ribose] polymerase 3 2.4.2.30 0.687
3c49 KU8Poly [ADP-ribose] polymerase 3 2.4.2.30 0.684
4bu9 08CTankyrase-2 2.4.2.30 0.684
4tkg 09LTankyrase-2 2.4.2.30 0.682
4bud 29FTankyrase-2 2.4.2.30 0.679
4bjc RPBTankyrase-2 2.4.2.30 0.676
4buu F38Tankyrase-2 2.4.2.30 0.673
4mt9 2D6Tankyrase-1 2.4.2.30 0.673
4but 31FTankyrase-2 2.4.2.30 0.672
4f1l 0RYPoly [ADP-ribose] polymerase 14 2.4.2.30 0.671
4bue JQFTankyrase-2 2.4.2.30 0.670
4bus 32FTankyrase-2 2.4.2.30 0.670
4tvj 09LPoly [ADP-ribose] polymerase 2 2.4.2.30 0.670
3c4h DRLPoly [ADP-ribose] polymerase 3 2.4.2.30 0.669
3u9y 09LTankyrase-2 2.4.2.30 0.669
4buv 16ITankyrase-2 2.4.2.30 0.669
4hlm 16STankyrase-2 2.4.2.30 0.665
4bjb P34Tankyrase-2 2.4.2.30 0.664
4hlg 20BTankyrase-2 2.4.2.30 0.663
4l0s 1UZTankyrase-2 2.4.2.30 0.663
5ewk P34Putative secreted protein / 0.663
4l09 1URTankyrase-2 2.4.2.30 0.662
4l0t 1V0Tankyrase-2 2.4.2.30 0.662
4kzl 20DTankyrase-2 2.4.2.30 0.661
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
3kr8 XAVTankyrase-2 2.4.2.30 0.659
4bs4 A64Tankyrase-2 2.4.2.30 0.658
4buw F33Tankyrase-2 2.4.2.30 0.657
4bui W2ETankyrase-2 2.4.2.30 0.655
4e5f 0N7Polymerase acidic protein / 0.655
4buf F36Tankyrase-2 2.4.2.30 0.654
4h0y NADIota toxin component Ia / 0.653
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.652
4fsz HK8Serine/threonine-protein kinase Chk1 2.7.11.1 0.651
4hki FLNTankyrase-2 2.4.2.30 0.651
4hl5 15WTankyrase-2 2.4.2.30 0.650
4l32 1VFTankyrase-2 2.4.2.30 0.650