2.800 Å
X-ray
2000-11-14
Name: | 2-dehydro-3-deoxyphosphooctonate aldolase |
---|---|
ID: | KDSA_ECOLI |
AC: | P0A715 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 2.5.1.55 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 38.994 |
---|---|
Number of residues: | 16 |
Including | |
Standard Amino Acids: | 16 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.501 | 870.750 |
% Hydrophobic | % Polar |
---|---|
33.33 | 66.67 |
According to VolSite |
HET Code: | PEP |
---|---|
Formula: | C3H2O6P |
Molecular weight: | 165.018 g/mol |
DrugBank ID: | DB01819 |
Buried Surface Area: | 48.27 % |
Polar Surface area: | 122.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 0 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
6.4036 | 111.287 | 75.3953 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1P | NZ | LYS- 138 | 3.74 | 0 | Ionic (Protein Cationic) |
O1P | CZ | ARG- 168 | 3.91 | 0 | Ionic (Protein Cationic) |
O2P | CZ | ARG- 168 | 3.41 | 0 | Ionic (Protein Cationic) |
O3P | CZ | ARG- 168 | 2.88 | 0 | Ionic (Protein Cationic) |
O1P | NH2 | ARG- 168 | 3.39 | 124.18 | H-Bond (Protein Donor) |