2.800 Å
X-ray
2000-11-14
| Name: | 2-dehydro-3-deoxyphosphooctonate aldolase |
|---|---|
| ID: | KDSA_ECOLI |
| AC: | P0A715 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 83333 |
| EC Number: | 2.5.1.55 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 38.994 |
|---|---|
| Number of residues: | 16 |
| Including | |
| Standard Amino Acids: | 16 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.501 | 870.750 |
| % Hydrophobic | % Polar |
|---|---|
| 33.33 | 66.67 |
| According to VolSite | |

| HET Code: | PEP |
|---|---|
| Formula: | C3H2O6P |
| Molecular weight: | 165.018 g/mol |
| DrugBank ID: | DB01819 |
| Buried Surface Area: | 48.27 % |
| Polar Surface area: | 122.36 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 0 |
| Rings: | 0 |
| Aromatic rings: | 0 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 6.4036 | 111.287 | 75.3953 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1P | NZ | LYS- 138 | 3.74 | 0 | Ionic (Protein Cationic) |
| O1P | CZ | ARG- 168 | 3.91 | 0 | Ionic (Protein Cationic) |
| O2P | CZ | ARG- 168 | 3.41 | 0 | Ionic (Protein Cationic) |
| O3P | CZ | ARG- 168 | 2.88 | 0 | Ionic (Protein Cationic) |
| O1P | NH2 | ARG- 168 | 3.39 | 124.18 | H-Bond (Protein Donor) |