scPDB - 4avu entry

Protein Data Bank Entry:

PDB ID : 4avu

Resolution :2.400 Å

Experimental Method : X-ray

Deposition Date : 2012-05-29

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Tankyrase-2
ID:	TNKS2_HUMAN
AC:	Q9H2K2
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	2.4.2.30

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	16.276
Number of residues:	25
Including
Standard Amino Acids:	23
Non Standard Amino Acids:	0
Water Molecules:	2
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.699	249.750

% Hydrophobic	% Polar
56.76	43.24
According to VolSite

Ligand :

HET Code:	LDR
Formula:	C13H9NO
Molecular weight:	195.217 g/mol
DrugBank ID:	-
Buried Surface Area:	75.21 %
Polar Surface area:	29.1 Å2

Number of
H-Bond Acceptors:	1
H-Bond Donors:	1
Rings:	3
Aromatic rings:	2
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	0
Rotatable Bonds:	0

Mass center Coordinates

X	Y	Z
-40.4623	-11.6347	12.7697

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
OAA	N	GLY- 1032	2.82	171.1	H-Bond (Protein Donor)	false
NAJ	O	GLY- 1032	2.72	147.99	H-Bond (Ligand Donor)	false
CAH	CD2	TYR- 1050	3.49	0	Hydrophobic	false
CAD	CB	TYR- 1050	3.62	0	Hydrophobic	false
CAN	CB	TYR- 1060	3.91	0	Hydrophobic	false
CAI	CB	TYR- 1060	3.31	0	Hydrophobic	false
CAG	CB	ALA- 1062	3.79	0	Hydrophobic	false
CAE	CD	LYS- 1067	4.31	0	Hydrophobic	false
CAC	CG	LYS- 1067	3.55	0	Hydrophobic	false
OAA	OG	SER- 1068	2.85	152.18	H-Bond (Protein Donor)	false
DuAr	DuAr	TYR- 1071	3.87	0	Aromatic Face/Face	false
CAL	CB	TYR- 1071	3.55	0	Hydrophobic	false
CAD	CD1	ILE- 1075	3.45	0	Hydrophobic	false
CAC	CG	GLU- 1138	4.19	0	Hydrophobic	false