2.890 Å
X-ray
2012-08-30
Name: | Poly [ADP-ribose] polymerase 1 |
---|---|
ID: | PARP1_HUMAN |
AC: | P09874 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.4.2.30 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 39.723 |
---|---|
Number of residues: | 16 |
Including | |
Standard Amino Acids: | 16 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.830 | 904.500 |
% Hydrophobic | % Polar |
---|---|
43.28 | 56.72 |
According to VolSite |
HET Code: | MEW |
---|---|
Formula: | C9H8N2O |
Molecular weight: | 160.173 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 74.13 % |
Polar Surface area: | 41.46 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 0 |
X | Y | Z |
---|---|---|
-27.4957 | 13.3757 | 61.0771 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
OAC | N | GLY- 863 | 3 | 168.1 | H-Bond (Protein Donor) |
NAQ | O | GLY- 863 | 2.68 | 158.03 | H-Bond (Ligand Donor) |
NAO | OH | TYR- 889 | 3.36 | 146.36 | H-Bond (Protein Donor) |
CAK | CB | TYR- 896 | 3.36 | 0 | Hydrophobic |
CAL | CB | ALA- 898 | 4.03 | 0 | Hydrophobic |
CAH | CG | LYS- 903 | 4.37 | 0 | Hydrophobic |
OAC | OG | SER- 904 | 2.87 | 159.34 | H-Bond (Protein Donor) |
CAN | CG | TYR- 907 | 4.02 | 0 | Hydrophobic |
CAH | CB | GLU- 988 | 4.1 | 0 | Hydrophobic |