1.600 Å
X-ray
2015-11-20
Name: | Putative secreted protein |
---|---|
ID: | C9Z6T8_STRSW |
AC: | C9Z6T8 |
Organism: | Streptomyces scabiei |
Reign: | Bacteria |
TaxID: | 680198 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 30.382 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.347 | 374.625 |
% Hydrophobic | % Polar |
---|---|
44.14 | 55.86 |
According to VolSite |
HET Code: | P34 |
---|---|
Formula: | C17H18N3O2 |
Molecular weight: | 296.344 g/mol |
DrugBank ID: | DB08348 |
Buried Surface Area: | 58.92 % |
Polar Surface area: | 62.64 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
23.3112 | 33.071 | 20.6642 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
OAD | N | SER- 78 | 2.81 | 154.71 | H-Bond (Protein Donor) |
NAN | O | SER- 78 | 2.83 | 166.14 | H-Bond (Ligand Donor) |
O | ND2 | ASN- 110 | 2.95 | 141.46 | H-Bond (Protein Donor) |
CAT | CB | SER- 117 | 3.42 | 0 | Hydrophobic |
CAI | CB | SER- 117 | 3.27 | 0 | Hydrophobic |
CAH | CB | THR- 119 | 3.95 | 0 | Hydrophobic |
CAH | CD2 | LEU- 124 | 3.6 | 0 | Hydrophobic |
CAE | CB | GLN- 158 | 4.11 | 0 | Hydrophobic |
CAF | CG | GLU- 160 | 3.69 | 0 | Hydrophobic |