1.600 Å
X-ray
2015-11-20
| Name: | Putative secreted protein |
|---|---|
| ID: | C9Z6T8_STRSW |
| AC: | C9Z6T8 |
| Organism: | Streptomyces scabiei |
| Reign: | Bacteria |
| TaxID: | 680198 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 30.382 |
|---|---|
| Number of residues: | 28 |
| Including | |
| Standard Amino Acids: | 25 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.347 | 374.625 |
| % Hydrophobic | % Polar |
|---|---|
| 44.14 | 55.86 |
| According to VolSite | |

| HET Code: | P34 |
|---|---|
| Formula: | C17H18N3O2 |
| Molecular weight: | 296.344 g/mol |
| DrugBank ID: | DB08348 |
| Buried Surface Area: | 58.92 % |
| Polar Surface area: | 62.64 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 2 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 23.3112 | 33.071 | 20.6642 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| OAD | N | SER- 78 | 2.81 | 154.71 | H-Bond (Protein Donor) |
| NAN | O | SER- 78 | 2.83 | 166.14 | H-Bond (Ligand Donor) |
| O | ND2 | ASN- 110 | 2.95 | 141.46 | H-Bond (Protein Donor) |
| CAT | CB | SER- 117 | 3.42 | 0 | Hydrophobic |
| CAI | CB | SER- 117 | 3.27 | 0 | Hydrophobic |
| CAH | CB | THR- 119 | 3.95 | 0 | Hydrophobic |
| CAH | CD2 | LEU- 124 | 3.6 | 0 | Hydrophobic |
| CAE | CB | GLN- 158 | 4.11 | 0 | Hydrophobic |
| CAF | CG | GLU- 160 | 3.69 | 0 | Hydrophobic |