2.400 Å
X-ray
1996-05-06
Name: | Poly [ADP-ribose] polymerase 1 |
---|---|
ID: | PARP1_CHICK |
AC: | P26446 |
Organism: | Gallus gallus |
Reign: | Eukaryota |
TaxID: | 9031 |
EC Number: | 2.4.2.30 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 23.261 |
---|---|
Number of residues: | 16 |
Including | |
Standard Amino Acids: | 15 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.737 | 810.000 |
% Hydrophobic | % Polar |
---|---|
45.83 | 54.17 |
According to VolSite |
HET Code: | DHQ |
---|---|
Formula: | C10H11NO |
Molecular weight: | 161.200 g/mol |
DrugBank ID: | DB03722 |
Buried Surface Area: | 71.26 % |
Polar Surface area: | 29.1 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 1 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 0 |
X | Y | Z |
---|---|---|
41.4142 | 22.9908 | 21.6615 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O | N | GLY- 863 | 2.74 | 171.95 | H-Bond (Protein Donor) |
N2 | O | GLY- 863 | 2.99 | 152.98 | H-Bond (Ligand Donor) |
C9 | CD2 | TYR- 896 | 3.49 | 0 | Hydrophobic |
C5 | CB | TYR- 896 | 3.54 | 0 | Hydrophobic |
C7 | CB | ALA- 898 | 3.95 | 0 | Hydrophobic |
C7 | CD | LYS- 903 | 4.11 | 0 | Hydrophobic |
O | OG | SER- 904 | 3.04 | 151.81 | H-Bond (Protein Donor) |
C4 | CZ | TYR- 907 | 3.71 | 0 | Hydrophobic |
C9 | CZ | TYR- 907 | 3.96 | 0 | Hydrophobic |
C6 | CG | GLU- 988 | 3.86 | 0 | Hydrophobic |